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Comment: Comment: Variant calling using samtools
12 months ago by lethalfang ▴ 140
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1.2k
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Comment: Comment: Variant calling using samtools
12 months ago by lethalfang ▴ 140
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Comment: Comment: What is the best way to retrieve gene name from variant mutation?
12 months ago by lethalfang ▴ 140
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Answer: Answer: Allele Frequency >0.5 for cancer somatic mutations?
13 months ago by lethalfang ▴ 140
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Comment: Comment: What's the general view on point & click bioinformatics for routine analyses?
13 months ago by lethalfang ▴ 140
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Answer: Answer: bedtools intersect zero output
13 months ago by lethalfang ▴ 140
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Comment: Comment: Using Copy Number Alterations detected in other studies for the same tumor cell
13 months ago by lethalfang ▴ 140
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854
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Comment: Comment: Somatic truth set
13 months ago by lethalfang ▴ 140
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565
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Answer: Answer: GATK MQ-scores differ depending on reference genome
23 months ago by lethalfang ▴ 140
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875
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Answer: Answer: What's probability of the same SNP occurring across all samples in a dataset by
2.1 years ago by lethalfang ▴ 140
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Answer: Answer: need to remove some part of header fasta file
2.3 years ago by lethalfang ▴ 140
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Answer: Answer: How can I know what is a good and bad variant call?
2.5 years ago by lethalfang ▴ 140
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2.0k
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Comment: Comment: Help understanding "sed" command in a loop
2.5 years ago by lethalfang ▴ 140
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2.0k
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Answer: Answer: Help understanding "sed" command in a loop
2.5 years ago by lethalfang ▴ 140
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1
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1.4k
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Comment: Comment: A bash question
2.5 years ago by lethalfang ▴ 140
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1.4k
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Answer: Answer: A bash question
2.5 years ago by lethalfang ▴ 140
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Answer: Answer: Should I buy a new apple M1-max with 64Gb Ram for single cell RNA seq analysis?
2.5 years ago by lethalfang ▴ 140
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660
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Answer: Answer: GATK mutech2: Sample not found in BAM header
2.5 years ago by lethalfang ▴ 140
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712
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Answer: Answer: Understanding FREQ; Reasons for variant allele frequency to deviate from 50%
2.5 years ago by lethalfang ▴ 140
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80k
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Comment: C: Bedtools Compare Multiple Bed Files?
updated 4.4 years ago by 43k • written 10.0 years ago by ▴ 140
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3.7k
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Comment: C: Somaticsniper Hangs Up
updated 4.6 years ago by 43k • written 9.4 years ago by ▴ 140
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2.7k
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Comment: Comment: Any experience using SomaticSeq for RNAseq SNV?
2.6 years ago by lethalfang ▴ 140
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