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Comment: C: metagenomics of gut sequences
8.9 years ago by marina.v.yurieva ▴ 570
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5.1k
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Comment: C: metagenomics of gut sequences
8.9 years ago by marina.v.yurieva ▴ 570
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1
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18k
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Comment: Comment: Extract fasta sequences from a large file using a list of names
updated 14 months ago by 43k • written 9.0 years ago by ▴ 570
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1.9k
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Comment: C: Merging several DISCOVAR "variant" files
9.1 years ago by marina.v.yurieva ▴ 570
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8.9k
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Comment: C: Low mapping rate
9.2 years ago by marina.v.yurieva ▴ 570
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8.9k
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Comment: Comment: Low mapping rate
updated 24 months ago by 43k • written 9.2 years ago by ▴ 570
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2.9k
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Comment: C: Is there an ftp file upload for MG-RAST?
9.2 years ago by marina.v.yurieva ▴ 570
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3
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2.9k
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Is there an ftp file upload for MG-RAST?
mg-rast microbiome metagenomics
updated 2.2 years ago by • 0 • written 9.2 years ago by ▴ 570
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1
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3.6k
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Comment: C: Calling SNPs with 1X depth (samtools/bcftools)
9.2 years ago by marina.v.yurieva ▴ 570
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1
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4.1k
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Answer: Answer: Bulk Segregant Analysis using next generation sequencing data
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 570
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0
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1.8k
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Answer: Answer: Are these steps correct? Galaxy
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 570
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3.8k
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Comment: Comment: BWA MEM mapping issue
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 570
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1
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3.8k
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Comment: Comment: BWA MEM mapping issue
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 570
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9
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3.8k
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BWA MEM mapping issue
alignment next-gen bwa
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 570
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6.7k
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Comment: Comment: Bulk downloading IMG gene ID information
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 570
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0
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3.3k
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Answer: A: which tools you use to generate artificial NGS?
9.2 years ago by marina.v.yurieva ▴ 570
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8.1k
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Comment: C: CodeML Troubleshooting Help
9.2 years ago by marina.v.yurieva ▴ 570
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2.2k
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Comment: Comment: error using bedtools closestbed
updated 2.1 years ago by 43k • written 9.2 years ago by ▴ 570
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2.2k
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Answer: A: error using bedtools closestbed
9.2 years ago by marina.v.yurieva ▴ 570
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1
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3.3k
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Answer: Answer: mm9 genomic annotation UTR, Codon, Promoter
updated 2.1 years ago by 43k • written 9.2 years ago by ▴ 570
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1
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2.0k
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Answer: Answer: how to order a list of PDB files
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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1
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2.0k
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Comment: C: how to order a list of PDB files
9.3 years ago by marina.v.yurieva ▴ 570
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1
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2.6k
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Comment: C: HTSeq TSS plot Error
9.3 years ago by marina.v.yurieva ▴ 570
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1
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1.9k
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Comment: Comment: GenomeStrip testinstall error
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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0
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4.6k
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Answer: Answer: How to assess the quality of metagenomics assembly?
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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1
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2.1k
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Comment: Comment: Troubles installing QPALMA
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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6.2k
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Comment: Comment: Confused about the quality control strategy of 16s pair_end sequence from Illumi
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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2.1k
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Answer: Answer: Estimating bacterial abundances from SRA files with multiple SRR files
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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1
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6.2k
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Comment: Comment: Confused about the quality control strategy of 16s pair_end sequence from Illumi
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
0
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0
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6.2k
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Comment: Comment: Confused about the quality control strategy of 16s pair_end sequence from Illumi
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
1
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1
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6.2k
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Answer: Answer: Confused about the quality control strategy of 16s pair_end sequence from Illumi
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
0
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0
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2.3k
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False negative SNPs and depth of coverage with sam/bcftools
SNP bcftools samtools
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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3.7k
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Answer: Answer: GATK vs more traditional SNP and alignment tools
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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0
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2.9k
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Answer: Answer: Download all available metagenomes genbank files in batch
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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1
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2.7k
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Comment: C: pseudogene in Microarray DEGs analysis
9.3 years ago by marina.v.yurieva ▴ 570
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0
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4.1k
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Comment: Comment: Quality control & Processing of RNA seq data
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
2
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1
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4.1k
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Answer: Answer: Quality control & Processing of RNA seq data
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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0
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2.2k
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Comment: Comment: Datawarehouse For Bioinformatics
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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0
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2.9k
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Answer: Answer: Qiime Split_libraries.py Unassigned reads output not present
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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1
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3.5k
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Answer: Answer: Automating Paired End mating
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 570
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1.8k
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Comment: Comment: Do Bioinformaticians only work with data from living organisms?
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 570
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2.9k
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Comment: C: representation of chipseq and RNA-seq data
9.4 years ago by marina.v.yurieva ▴ 570
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0
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2.4k
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Comment: Comment: Which tool/method to use for Raw data quality evaluation and filtering
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 570
2
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1
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2.4k
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Answer: Answer: Which tool/method to use for Raw data quality evaluation and filtering
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 570
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0
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6.8k
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Answer: Answer: Should we assemble/merge R1 and R2 reads from Illumina MiSeq of fungal ITS ampli
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 570
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16k
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Comment: C: Best software to assemble bacterial genomes
9.4 years ago by marina.v.yurieva ▴ 570
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0
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5.3k
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Answer: Answer: loop over lines group by group and do something separately in text file
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 570
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0
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2.7k
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Comment: Comment: Chip-seq common control for two treatments
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 570
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0
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3.3k
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Answer: A: Determing the accuracy of a "merged" genome assembly
9.5 years ago by marina.v.yurieva ▴ 570
0
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1
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5.0k
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Comment: Comment: quality control with the 16s miseq data
updated 2.4 years ago by 43k • written 9.5 years ago by ▴ 570
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