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Comment: C: Extraction of information from stringtie output for selected gene ids
2.3 years ago by marina.v.yurieva ▴ 560
2
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0
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636
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Data integration tools for multi-omics sequencing data
RNA-Seq ChIP-Seq sequencing next-gen
2.3 years ago by marina.v.yurieva ▴ 560
3
votes
2
replies
1.6k
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StringTie --merge creates the same id for neighbouring genes
stringtie ensembl gene assembly
updated 2.1 years ago by • 0 • written 3.9 years ago by ▴ 560
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1
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2.0k
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Answer: A: Retriving the base and its quality from fastq file
updated 3.5 years ago by 39k • written 7.4 years ago by ▴ 560
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1
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3.9k
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Answer: A: Best way to generate rarefaction curves from 16S/18S data-reclustering?
updated 3.5 years ago by 39k • written 7.4 years ago by ▴ 560
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0
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5.0k
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Comment: C: Bioinformatics project for a beginner
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 560
0
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1
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2.1k
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Answer: A: Simulating single end reads with dwgsim
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 560
0
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0
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2.2k
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Answer: A: 16S rRNA micobiome project: Which primers to use?
updated 3.6 years ago by 39k • written 7.8 years ago by ▴ 560
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0
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2.1k
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Answer: A: Query Regarding 454 paired end Metagenomic Data
updated 3.6 years ago by 39k • written 7.9 years ago by ▴ 560
1
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1
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2.1k
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Comment: C: Merge indel VCF files
updated 3.6 years ago by 39k • written 8.5 years ago by ▴ 560
0
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1
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891
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Comment: C: Stringtie --merge with PE and SE files
3.9 years ago by marina.v.yurieva ▴ 560
0
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3
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891
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Stringtie --merge with PE and SE files
assembly bam
3.9 years ago by marina.v.yurieva ▴ 560
0
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0
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2.3k
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Comment: C: Gene(s) withTpm value(s) zero in kallisto though reads are mapped
4.8 years ago by marina.v.yurieva ▴ 560
1
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0
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2.5k
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Comment: C: Stranded RNA-seq data visualization in UCSC
4.8 years ago by marina.v.yurieva ▴ 560
0
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0
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2.2k
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Comment: C: bedGraph compress tools
4.8 years ago by marina.v.yurieva ▴ 560
0
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1
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2.5k
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Comment: C: Stranded RNA-seq data visualization in UCSC
4.8 years ago by marina.v.yurieva ▴ 560
0
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1
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2.5k
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Comment: C: Stranded RNA-seq data visualization in UCSC
4.8 years ago by marina.v.yurieva ▴ 560
7
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8
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2.5k
views
Stranded RNA-seq data visualization in UCSC
RNA-Seq stranded visualization bedgraph
updated 4.8 years ago by 6.1k • written 4.8 years ago by ▴ 560
0
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1
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1.6k
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Comment: C: Problems uploading custom track to UCSC Genome Browser
4.8 years ago by marina.v.yurieva ▴ 560
1
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0
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1.8k
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Comment: C: hg38 gtf file containing all RNAs and features
4.8 years ago by marina.v.yurieva ▴ 560
0
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2
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1.6k
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Comment: C: Problems uploading custom track to UCSC Genome Browser
4.8 years ago by marina.v.yurieva ▴ 560
0
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0
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1.8k
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Comment: C: hg38 gtf file containing all RNAs and features
4.8 years ago by marina.v.yurieva ▴ 560
2
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0
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5.5k
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Answer: C: extract only rows eith numbers?
4.8 years ago by marina.v.yurieva ▴ 560
0
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1
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1.6k
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Comment: C: Problems uploading custom track to UCSC Genome Browser
4.8 years ago by marina.v.yurieva ▴ 560
0
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0
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6.9k
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Comment: C: Mapping vs Quasi-Mapping
4.8 years ago by marina.v.yurieva ▴ 560
0
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0
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2.2k
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Comment: C: bedGraph compress tools
4.8 years ago by marina.v.yurieva ▴ 560
0
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1
reply
2.2k
views
Comment: C: bedGraph compress tools
4.8 years ago by marina.v.yurieva ▴ 560
0
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0
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2.2k
views
Comment: C: bedGraph compress tools
4.8 years ago by marina.v.yurieva ▴ 560
1
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8
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2.2k
views
bedGraph compress tools
bedtools bedGraph
4.8 years ago by marina.v.yurieva ▴ 560
0
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0
replies
810
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Comment: C: RNA seq with edge R
4.9 years ago by marina.v.yurieva ▴ 560
0
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0
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32k
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Comment: C: How to know that your RNA-seq is stranded or not?
4.9 years ago by marina.v.yurieva ▴ 560
0
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0
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5.8k
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Comment: C: What kind of distribution to you expect to see for RNA-Seq expression levels?
4.9 years ago by marina.v.yurieva ▴ 560
1
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4
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1.4k
views
Combining two databases in gtf file, bedtools gives wierd result
bedtools gtf noncode
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 560
0
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0
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1.4k
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Comment: C: Combining two databases in gtf file, bedtools gives wierd result
4.9 years ago by marina.v.yurieva ▴ 560
0
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1
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1.4k
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Comment: C: Combining two databases in gtf file, bedtools gives wierd result
4.9 years ago by marina.v.yurieva ▴ 560
3
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2
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6.9k
views
Answer: Answer: RNASeq user experience with Novogene?
updated 5 months ago by 39k • written 4.9 years ago by ▴ 560
0
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0
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13k
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Comment: A: Gene names in Ballgown differential expression analysis
6.6 years ago by marina.v.yurieva ▴ 560
2
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4
replies
3.2k
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Counts from cuffdiff VS featurecounts
RNA-Seq cufflinks counts
updated 6.7 years ago by 12k • written 6.7 years ago by ▴ 560
0
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1
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3.2k
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Comment: C: Counts from cuffdiff VS featurecounts
6.7 years ago by marina.v.yurieva ▴ 560
3
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1
reply
2.1k
views
InterPro Scan error with nucleotide sequences
sequence domain database
updated 6.7 years ago by ★ 2.1k • written 6.7 years ago by ▴ 560
0
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0
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1.5k
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Comment: C: Tophat/Cufflinks for stranded RNA-seq data
6.8 years ago by marina.v.yurieva ▴ 560
1
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2
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1.5k
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Tophat/Cufflinks for stranded RNA-seq data
RNA-Seq
updated 6.8 years ago by 103k • written 6.8 years ago by ▴ 560
0
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0
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6.1k
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Answer: A: Bioinformatics and wet lab science combined
7.9 years ago by marina.v.yurieva ▴ 560
0
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1
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1.9k
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Comment: C: NCBI FASTA files are a bit crazy
7.9 years ago by marina.v.yurieva ▴ 560
0
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2
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1.7k
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Answer: Answer: Segmentation fault for Igblastn with species human
updated 4 months ago by 39k • written 8.0 years ago by ▴ 560
1
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0
replies
4.5k
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Answer: Answer: Metagenome raw data download
updated 13 months ago by 39k • written 8.0 years ago by ▴ 560
1
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0
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5.2k
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Answer: Answer: Can you pool individuals to make 1 biological replicate?
updated 4 months ago by 39k • written 8.0 years ago by ▴ 560
0
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1
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4.3k
views
Comment: Comment: Removing bacterial contamination of mouse gut sequences through metagenomic tech
updated 4 months ago by 39k • written 8.0 years ago by ▴ 560
0
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1
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4.3k
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Comment: Comment: Removing bacterial contamination of mouse gut sequences through metagenomic tech
updated 4 months ago by 39k • written 8.0 years ago by ▴ 560
0
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1
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4.3k
views
Comment: C: metagenomics of gut sequences
8.0 years ago by marina.v.yurieva ▴ 560
113 results • Page 1 of 3
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