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1
vote
1
reply
943
views
Comment:
C: Extraction of information from stringtie output for selected gene ids
3.8 years ago by
marina.v.yurieva
▴ 580
3
votes
0
replies
925
views
Data integration tools for multi-omics sequencing data
RNA-Seq
ChIP-Seq
sequencing
next-gen
3.8 years ago by
marina.v.yurieva
▴ 580
3
votes
2
replies
2.2k
views
StringTie --merge creates the same id for neighbouring genes
stringtie
ensembl
gene assembly
updated 3.5 years ago by
PeiwenLi
• 0 • written 5.3 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
2.5k
views
Answer:
A: Retriving the base and its quality from fastq file
updated 4.9 years ago by
Ram
44k • written 8.8 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
4.5k
views
Answer:
A: Best way to generate rarefaction curves from 16S/18S data-reclustering?
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
5.4k
views
Comment:
C: Bioinformatics project for a beginner
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
2.5k
views
Answer:
A: Simulating single end reads with dwgsim
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
2.5k
views
Answer:
A: 16S rRNA micobiome project: Which primers to use?
updated 5.0 years ago by
Ram
44k • written 9.2 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
2.4k
views
Answer:
A: Query Regarding 454 paired end Metagenomic Data
updated 5.0 years ago by
Ram
44k • written 9.4 years ago by
marina.v.yurieva
▴ 580
1
vote
1
reply
2.4k
views
Comment:
C: Merge indel VCF files
updated 5.1 years ago by
Ram
44k • written 9.9 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
1.2k
views
Comment:
C: Stringtie --merge with PE and SE files
5.3 years ago by
marina.v.yurieva
▴ 580
0
votes
3
replies
1.2k
views
Stringtie --merge with PE and SE files
assembly
bam
5.3 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
3.0k
views
Comment:
C: Gene(s) withTpm value(s) zero in kallisto though reads are mapped
6.2 years ago by
marina.v.yurieva
▴ 580
1
vote
0
replies
3.3k
views
Comment:
C: Stranded RNA-seq data visualization in UCSC
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
3.0k
views
Comment:
C: bedGraph compress tools
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
3.3k
views
Comment:
C: Stranded RNA-seq data visualization in UCSC
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
3.3k
views
Comment:
C: Stranded RNA-seq data visualization in UCSC
6.2 years ago by
marina.v.yurieva
▴ 580
7
votes
8
replies
3.3k
views
Stranded RNA-seq data visualization in UCSC
RNA-Seq
stranded
visualization
bedgraph
updated 6.2 years ago by
Rob
6.9k • written 6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
2.3k
views
Comment:
C: Problems uploading custom track to UCSC Genome Browser
6.2 years ago by
marina.v.yurieva
▴ 580
1
vote
0
replies
2.3k
views
Comment:
C: hg38 gtf file containing all RNAs and features
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
2
replies
2.3k
views
Comment:
C: Problems uploading custom track to UCSC Genome Browser
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
2.3k
views
Comment:
C: hg38 gtf file containing all RNAs and features
6.2 years ago by
marina.v.yurieva
▴ 580
2
votes
0
replies
7.3k
views
Answer:
C: extract only rows eith numbers?
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
2.3k
views
Comment:
C: Problems uploading custom track to UCSC Genome Browser
6.2 years ago by
marina.v.yurieva
▴ 580
1
vote
0
replies
9.1k
views
Comment:
C: Mapping vs Quasi-Mapping
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
3.0k
views
Comment:
C: bedGraph compress tools
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
3.0k
views
Comment:
C: bedGraph compress tools
6.2 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
3.0k
views
Comment:
C: bedGraph compress tools
6.2 years ago by
marina.v.yurieva
▴ 580
1
vote
8
replies
3.0k
views
bedGraph compress tools
bedtools
bedGraph
6.3 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
1.2k
views
Comment:
C: RNA seq with edge R
6.3 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
39k
views
Comment:
C: How to know that your RNA-seq is stranded or not?
6.3 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
6.9k
views
Comment:
C: What kind of distribution to you expect to see for RNA-Seq expression levels?
6.3 years ago by
marina.v.yurieva
▴ 580
1
vote
4
replies
1.8k
views
Combining two databases in gtf file, bedtools gives wierd result
bedtools
gtf
noncode
updated 6.3 years ago by
Biostar
20 • written 6.4 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
1.8k
views
Comment:
C: Combining two databases in gtf file, bedtools gives wierd result
6.3 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
1.8k
views
Comment:
C: Combining two databases in gtf file, bedtools gives wierd result
6.3 years ago by
marina.v.yurieva
▴ 580
3
votes
2
replies
10k
views
Answer:
Answer: RNASeq user experience with Novogene?
updated 22 months ago by
Ram
44k • written 6.4 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
14k
views
Comment:
A: Gene names in Ballgown differential expression analysis
8.0 years ago by
marina.v.yurieva
▴ 580
2
votes
4
replies
3.7k
views
Counts from cuffdiff VS featurecounts
RNA-Seq
cufflinks
counts
updated 8.1 years ago by
GouthamAtla
12k • written 8.1 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
3.7k
views
Comment:
C: Counts from cuffdiff VS featurecounts
8.1 years ago by
marina.v.yurieva
▴ 580
3
votes
1
reply
2.4k
views
InterPro Scan error with nucleotide sequences
sequence
domain database
updated 8.1 years ago by
Amitm
★ 2.3k • written 8.1 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
1.8k
views
Comment:
C: Tophat/Cufflinks for stranded RNA-seq data
8.2 years ago by
marina.v.yurieva
▴ 580
1
vote
2
replies
1.8k
views
Tophat/Cufflinks for stranded RNA-seq data
RNA-Seq
updated 8.2 years ago by
Devon Ryan
104k • written 8.2 years ago by
marina.v.yurieva
▴ 580
0
votes
0
replies
7.6k
views
Answer:
A: Bioinformatics and wet lab science combined
9.3 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
2.3k
views
Comment:
C: NCBI FASTA files are a bit crazy
9.4 years ago by
marina.v.yurieva
▴ 580
0
votes
2
replies
2.1k
views
Answer:
Answer: Segmentation fault for Igblastn with species human
updated 22 months ago by
Ram
44k • written 9.4 years ago by
marina.v.yurieva
▴ 580
1
vote
0
replies
5.1k
views
Answer:
Answer: Metagenome raw data download
updated 2.5 years ago by
Ram
44k • written 9.5 years ago by
marina.v.yurieva
▴ 580
1
vote
0
replies
5.8k
views
Answer:
Answer: Can you pool individuals to make 1 biological replicate?
updated 22 months ago by
Ram
44k • written 9.5 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
5.6k
views
Comment:
Comment: Removing bacterial contamination of mouse gut sequences through metagenomic tech
updated 21 months ago by
Ram
44k • written 9.5 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
5.6k
views
Comment:
Comment: Removing bacterial contamination of mouse gut sequences through metagenomic tech
updated 21 months ago by
Ram
44k • written 9.5 years ago by
marina.v.yurieva
▴ 580
0
votes
1
reply
5.6k
views
Comment:
C: metagenomics of gut sequences
9.5 years ago by
marina.v.yurieva
▴ 580
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