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88
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Comment: Comment: CNV loss and high expression
14 hours ago by iraun ★ 4.3k
1
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0
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203
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Comment: Comment: Difference between commands [bowtie2, samtools]
14 hours ago by iraun ★ 4.3k
2
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2
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203
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Answer: Answer: Difference between commands [bowtie2, samtools]
23 hours ago by iraun ★ 4.3k
1
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0
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309
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Comment: Comment: For loop in R
2 days ago by iraun ★ 4.3k
1
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1
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292
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Comment: Comment: building snpEff database
10 days ago by iraun ★ 4.3k
2
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1
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181
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Answer: Answer: featureCounts results has many psedugenes(ENSG***) together with genes
11 days ago by iraun ★ 4.3k
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1
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169
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Answer: Answer: bcftools consensus overlapped variant
11 days ago by iraun ★ 4.3k
1
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1
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270
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Comment: Comment: Accessing COSMIC database via Python script
11 days ago by iraun ★ 4.3k
1
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1
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181
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Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
11 days ago by iraun ★ 4.3k
0
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2
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162
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Comment: Comment: Extract 3'utr sequences from annotation file
12 days ago by iraun ★ 4.3k
0
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0
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196
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Comment: Comment: RSEM Prepare Reference - transcriptome instead of genome reference?
15 days ago by iraun ★ 4.3k
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1
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196
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Comment: Comment: RSEM Prepare Reference - transcriptome instead of genome reference?
16 days ago by iraun ★ 4.3k
0
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0
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230
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Comment: Comment: technical replicates
16 days ago by iraun ★ 4.3k
0
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1
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233
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Comment: Comment: RNA-seq alignment in UNIX
17 days ago by iraun ★ 4.3k
0
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1
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214
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Comment: Comment: Addning RNA-seq data to machine learning
18 days ago by iraun ★ 4.3k
1
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1
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274
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Comment: Comment: Exon-level counts with featureCounts
18 days ago by iraun ★ 4.3k
1
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1
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182
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Comment: Comment: phasing VCF
18 days ago by iraun ★ 4.3k
3
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1
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220
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Answer: Answer: How to label genes passing the p-value and fold change cut-offs in EnhancedVolca
19 days ago by iraun ★ 4.3k
2
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1
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249
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Comment: Comment: DeSeq2 analysis of samples with no replicates?
20 days ago by iraun ★ 4.3k
1
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2
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369
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Answer: Answer: all variables in design formula must be columns in colData
5 weeks ago by iraun ★ 4.3k
0
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0
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148
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Comment: Comment: Retrieve only protein coding esnsemble gene ids and gene symbols
5 weeks ago by iraun ★ 4.3k
1
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1
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229
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Comment: Comment: Issue when trying to extract sequences from a genome using bed coordinates and s
5 weeks ago by iraun ★ 4.3k
0
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0
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241
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Comment: Comment: extract ALL mapped paired-end reads from BAM file
5 weeks ago by iraun ★ 4.3k
2
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0
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397
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Comment: Comment: make a BED file with exons only
5 weeks ago by iraun ★ 4.3k
0
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1
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229
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Answer: Answer: Issue when trying to extract sequences from a genome using bed coordinates and s
5 weeks ago by iraun ★ 4.3k
0
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1
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397
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Comment: Comment: make a BED file with exons only
5 weeks ago by iraun ★ 4.3k
2
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0
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122
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Answer: Answer: Intronic gVCF
5 weeks ago by iraun ★ 4.3k
0
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0
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400
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Comment: Comment: Visualization of Frameshift mutations in IGV using Bam files
6 weeks ago by iraun ★ 4.3k
0
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0
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295
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Answer: Answer: Tumor cell percentage detection tool
6 weeks ago by iraun ★ 4.3k
0
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1
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400
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Comment: Comment: Visualization of Frameshift mutations in IGV using Bam files
6 weeks ago by iraun ★ 4.3k
0
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0
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221
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Comment: Comment: Read depth per base DNA seq
6 weeks ago by iraun ★ 4.3k
2
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1
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400
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Answer: Answer: Visualization of Frameshift mutations in IGV using Bam files
6 weeks ago by iraun ★ 4.3k
0
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0
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137
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Answer: Answer: Why some variants doesn't have RS number?
6 weeks ago by iraun ★ 4.3k
1
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0
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8.6k
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Comment: Comment: Gene Set Enrichment Analysis
7 weeks ago by iraun ★ 4.3k
2
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1
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346
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Comment: Comment: htseq-count error
7 weeks ago by iraun ★ 4.3k
0
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1
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211
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Comment: Comment: Fasta_reader.pm Trinity fails
7 weeks ago by iraun ★ 4.3k
3
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2
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346
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Answer: Answer: htseq-count error
7 weeks ago by iraun ★ 4.3k
0
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0
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254
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Comment: Comment: separate meta-population data from VCF
7 weeks ago by iraun ★ 4.3k
2
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0
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148
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Answer: Answer: Spades command for single cultivator
7 weeks ago by iraun ★ 4.3k
0
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0
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174
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Comment: Comment: What is recurrent somatic copy-number alterations?
7 weeks ago by iraun ★ 4.3k
1
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0
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414
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Comment: Comment: DP meaning in VCF files
7 weeks ago by iraun ★ 4.3k
0
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0
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175
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Comment: Comment: How exactly count numbers are calculated with tximport
7 weeks ago by iraun ★ 4.3k
0
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0
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178
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Comment: Comment: Where to find and extract coordinates of common CNV and repetitive regions in hu
7 weeks ago by iraun ★ 4.3k
0
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0
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191
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Comment: Comment: Filtering genes in scRNA-seq
7 weeks ago by iraun ★ 4.3k
0
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1
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254
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Comment: Comment: separate meta-population data from VCF
7 weeks ago by iraun ★ 4.3k
0
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1
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449
views
Answer: Answer: How to perform Allele balance on a VCF file from GATK?
7 weeks ago by iraun ★ 4.3k
1
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1
reply
634
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Comment: Comment: "transcript reads were aligned to the RefSeq transcriptome (downloaded March 201
7 weeks ago by iraun ★ 4.3k
0
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0
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256
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Comment: Comment: Bash loop one liner
7 weeks ago by iraun ★ 4.3k
1
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1
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256
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Answer: Answer: Bash loop one liner
7 weeks ago by iraun ★ 4.3k
0
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2
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449
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
7 weeks ago by iraun ★ 4.3k
429 results • Page 1 of 9
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