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88
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Comment:
Comment: CNV loss and high expression
14 hours ago by
iraun
★ 4.3k
1
vote
0
replies
203
views
Comment:
Comment: Difference between commands [bowtie2, samtools]
14 hours ago by
iraun
★ 4.3k
2
votes
2
replies
203
views
Answer:
Answer: Difference between commands [bowtie2, samtools]
23 hours ago by
iraun
★ 4.3k
1
vote
0
replies
309
views
Comment:
Comment: For loop in R
2 days ago by
iraun
★ 4.3k
1
vote
1
reply
292
views
Comment:
Comment: building snpEff database
10 days ago by
iraun
★ 4.3k
2
votes
1
reply
181
views
Answer:
Answer: featureCounts results has many psedugenes(ENSG***) together with genes
11 days ago by
iraun
★ 4.3k
0
votes
1
reply
169
views
Answer:
Answer: bcftools consensus overlapped variant
11 days ago by
iraun
★ 4.3k
1
vote
1
reply
270
views
Comment:
Comment: Accessing COSMIC database via Python script
11 days ago by
iraun
★ 4.3k
1
vote
1
reply
181
views
Comment:
Comment: featureCounts results has many psedugenes(ENSG***) together with genes
11 days ago by
iraun
★ 4.3k
0
votes
2
replies
162
views
Comment:
Comment: Extract 3'utr sequences from annotation file
12 days ago by
iraun
★ 4.3k
0
votes
0
replies
196
views
Comment:
Comment: RSEM Prepare Reference - transcriptome instead of genome reference?
15 days ago by
iraun
★ 4.3k
0
votes
1
reply
196
views
Comment:
Comment: RSEM Prepare Reference - transcriptome instead of genome reference?
16 days ago by
iraun
★ 4.3k
0
votes
0
replies
230
views
Comment:
Comment: technical replicates
16 days ago by
iraun
★ 4.3k
0
votes
1
reply
233
views
Comment:
Comment: RNA-seq alignment in UNIX
17 days ago by
iraun
★ 4.3k
0
votes
1
reply
214
views
Comment:
Comment: Addning RNA-seq data to machine learning
18 days ago by
iraun
★ 4.3k
1
vote
1
reply
274
views
Comment:
Comment: Exon-level counts with featureCounts
18 days ago by
iraun
★ 4.3k
1
vote
1
reply
182
views
Comment:
Comment: phasing VCF
18 days ago by
iraun
★ 4.3k
3
votes
1
reply
220
views
Answer:
Answer: How to label genes passing the p-value and fold change cut-offs in EnhancedVolca
19 days ago by
iraun
★ 4.3k
2
votes
1
reply
249
views
Comment:
Comment: DeSeq2 analysis of samples with no replicates?
20 days ago by
iraun
★ 4.3k
1
vote
2
replies
369
views
Answer:
Answer: all variables in design formula must be columns in colData
5 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
148
views
Comment:
Comment: Retrieve only protein coding esnsemble gene ids and gene symbols
5 weeks ago by
iraun
★ 4.3k
1
vote
1
reply
229
views
Comment:
Comment: Issue when trying to extract sequences from a genome using bed coordinates and s
5 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
241
views
Comment:
Comment: extract ALL mapped paired-end reads from BAM file
5 weeks ago by
iraun
★ 4.3k
2
votes
0
replies
397
views
Comment:
Comment: make a BED file with exons only
5 weeks ago by
iraun
★ 4.3k
0
votes
1
reply
229
views
Answer:
Answer: Issue when trying to extract sequences from a genome using bed coordinates and s
5 weeks ago by
iraun
★ 4.3k
0
votes
1
reply
397
views
Comment:
Comment: make a BED file with exons only
5 weeks ago by
iraun
★ 4.3k
2
votes
0
replies
122
views
Answer:
Answer: Intronic gVCF
5 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
400
views
Comment:
Comment: Visualization of Frameshift mutations in IGV using Bam files
6 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
295
views
Answer:
Answer: Tumor cell percentage detection tool
6 weeks ago by
iraun
★ 4.3k
0
votes
1
reply
400
views
Comment:
Comment: Visualization of Frameshift mutations in IGV using Bam files
6 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
221
views
Comment:
Comment: Read depth per base DNA seq
6 weeks ago by
iraun
★ 4.3k
2
votes
1
reply
400
views
Answer:
Answer: Visualization of Frameshift mutations in IGV using Bam files
6 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
137
views
Answer:
Answer: Why some variants doesn't have RS number?
6 weeks ago by
iraun
★ 4.3k
1
vote
0
replies
8.6k
views
Comment:
Comment: Gene Set Enrichment Analysis
7 weeks ago by
iraun
★ 4.3k
2
votes
1
reply
346
views
Comment:
Comment: htseq-count error
7 weeks ago by
iraun
★ 4.3k
0
votes
1
reply
211
views
Comment:
Comment: Fasta_reader.pm Trinity fails
7 weeks ago by
iraun
★ 4.3k
3
votes
2
replies
346
views
Answer:
Answer: htseq-count error
7 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
254
views
Comment:
Comment: separate meta-population data from VCF
7 weeks ago by
iraun
★ 4.3k
2
votes
0
replies
148
views
Answer:
Answer: Spades command for single cultivator
7 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
174
views
Comment:
Comment: What is recurrent somatic copy-number alterations?
7 weeks ago by
iraun
★ 4.3k
1
vote
0
replies
414
views
Comment:
Comment: DP meaning in VCF files
7 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
175
views
Comment:
Comment: How exactly count numbers are calculated with tximport
7 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
178
views
Comment:
Comment: Where to find and extract coordinates of common CNV and repetitive regions in hu
7 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
191
views
Comment:
Comment: Filtering genes in scRNA-seq
7 weeks ago by
iraun
★ 4.3k
0
votes
1
reply
254
views
Comment:
Comment: separate meta-population data from VCF
7 weeks ago by
iraun
★ 4.3k
0
votes
1
reply
449
views
Answer:
Answer: How to perform Allele balance on a VCF file from GATK?
7 weeks ago by
iraun
★ 4.3k
1
vote
1
reply
634
views
Comment:
Comment: "transcript reads were aligned to the RefSeq transcriptome (downloaded March 201
7 weeks ago by
iraun
★ 4.3k
0
votes
0
replies
256
views
Comment:
Comment: Bash loop one liner
7 weeks ago by
iraun
★ 4.3k
1
vote
1
reply
256
views
Answer:
Answer: Bash loop one liner
7 weeks ago by
iraun
★ 4.3k
0
votes
2
replies
449
views
Comment:
Comment: How to perform Allele balance on a VCF file from GATK?
7 weeks ago by
iraun
★ 4.3k
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