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Answer: Answer: Output unmapped reads to a file when using tophat2
updated 3.5 years ago by 45k • written 10.6 years ago by 6.2k
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3.2k
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Comment: Comment: NCBI Human Variation Sets VCF validation
updated 3.5 years ago by 45k • written 10.6 years ago by 6.2k
3
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1
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3.2k
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Answer: Answer: NCBI Human Variation Sets VCF validation
updated 3.5 years ago by 45k • written 10.6 years ago by 6.2k
9
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0
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13k
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Answer: Answer: Question about gens name starting "LOC~"
updated 3.5 years ago by 45k • written 10.6 years ago by 6.2k
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2.6k
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Comment: Comment: rna-seq fastqc number of parameters to pass
updated 3.5 years ago by 45k • written 10.6 years ago by 6.2k
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0
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2.6k
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Comment: Comment: rna-seq fastqc number of parameters to pass
updated 3.5 years ago by 45k • written 10.6 years ago by 6.2k
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2
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9.3k
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Answer: C: Counting number of duplicated reads from fastq file
10.6 years ago by iraun 6.2k
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7.9k
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Comment: C: use bedtools to find overlaps of bed and gff files
10.6 years ago by iraun 6.2k
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2.4k
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Comment: Comment: psl alignment format and qstarts- qends calculation
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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1
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3.1k
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Comment: Comment: Software to display draft genome statistics
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
13
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1
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12k
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Answer: A: GATK_HaplotypeCaller: <NON_REF> .
10.7 years ago by iraun 6.2k
1
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1
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3.1k
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Answer: Answer: Software to display draft genome statistics
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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0
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7.1k
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Comment: C: Mapping paired end and single end reads together
10.7 years ago by iraun 6.2k
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3.8k
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Comment: Comment: Adding special character in fasta headers
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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1
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3.8k
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Answer: Answer: Adding special character in fasta headers
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
1
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0
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9.8k
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Comment: C: blast excutation in linux
10.7 years ago by iraun 6.2k
1
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1
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9.8k
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Comment: C: blast excutation in linux
10.7 years ago by iraun 6.2k
1
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1
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13k
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Answer: Answer: Bowtie2: Why won't it recognize my index files?
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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2
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18k
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Comment: Comment: shell script for bowtie/bwa alignment pair end reads
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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0
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2.5k
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Comment: Comment: R plot with different point in graph
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
2
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1
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2.5k
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Answer: Answer: R plot with different point in graph
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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3
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13k
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Comment: Comment: No @SQ lines in the header
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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1
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7.1k
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Comment: Comment: GATK: RealignerTargetCreator and IndelRealigner related questions
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
3
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4
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7.1k
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GATK: RealignerTargetCreator and IndelRealigner related questions
GATK
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
1
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1
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2.4k
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Comment: Comment: Reference Genome file for assembly
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
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0
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2.1k
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Comment: C: Dealing with assembly versions
10.7 years ago by iraun 6.2k
2
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0
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5.1k
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Answer: A: Investigating a genome assembly
10.7 years ago by iraun 6.2k
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0
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3.5k
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Comment: C: Very slow SoapDenovo2 assembly
10.7 years ago by iraun 6.2k
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0
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3.0k
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Comment: Comment: how to find chromosome position ranges common to all files
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
2
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1
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3.4k
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Answer: Answer: Perl Code for Sequence Extraction
updated 3.5 years ago by 45k • written 10.7 years ago by 6.2k
1
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1
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4.4k
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Answer: A: Looking for breast cancer genes databases
10.7 years ago by iraun 6.2k
0
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1
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48k
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Comment: C: FPKM vs raw counts vs RPKM
10.8 years ago by iraun 6.2k
1
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3
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48k
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Comment: Comment: FPKM vs raw counts vs RPKM
updated 3.5 years ago by 45k • written 10.8 years ago by 6.2k
8
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2
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48k
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Answer: Answer: FPKM vs raw counts vs RPKM
updated 3.5 years ago by 45k • written 10.8 years ago by 6.2k
2
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1
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3.6k
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Comment: Comment: Making a Consensus Sequence of a Gene
updated 3.5 years ago by 45k • written 10.8 years ago by 6.2k
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0
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2.0k
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Answer: A: Tool Generates CDS sequence
10.8 years ago by iraun 6.2k
3
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1
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2.7k
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Get completely overlapping features
bedtools intersect
updated 2.5 years ago by 45k • written 10.8 years ago by 6.2k
1
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0
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6.5k
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Answer: Answer: What to do after an genome assembly?
updated 3.5 years ago by 45k • written 10.8 years ago by 6.2k
6
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17
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5.5k
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Extract sequences from fasta NOT present in list of IDs
fasta
updated 3.0 years ago by 45k • written 10.8 years ago by 6.2k
0
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1
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5.5k
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Comment: C: Extract sequences from fasta NOT present in list of IDs
10.8 years ago by iraun 6.2k
0
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0
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5.5k
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Comment: Comment: Extract sequences from fasta NOT present in list of IDs
updated 3.5 years ago by 45k • written 10.8 years ago by 6.2k
2
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1
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13k
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Answer: Answer: bowtie2- running command problem
updated 3.6 years ago by 45k • written 10.8 years ago by 6.2k
1
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1
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3.5k
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Comment: C: Error in importing BAM files
10.8 years ago by iraun 6.2k
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0
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3.2k
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Comment: C: Question about number of reads within intervals
10.8 years ago by iraun 6.2k
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1
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8.0k
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Comment: C: Does whole genome sequencing capture plasmids?
10.8 years ago by iraun 6.2k
3
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1
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8.0k
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Answer: C: whole genome sequencing
10.8 years ago by iraun 6.2k
1
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0
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6.4k
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Answer: A: loop over lines group by group and do something separately in text file
10.8 years ago by iraun 6.2k
9
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0
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18k
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Answer: A: Best software to assemble bacterial genomes
10.8 years ago by iraun 6.2k
1
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1
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6.7k
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Comment: C: Pre-processing And Quality Control of the Raw NGS Data -- > trimming
10.8 years ago by iraun 6.2k
4
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7
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8.4k
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How to create chain file to change genome coordinates from one genome version to another
remap liftover chain-format
updated 3.6 years ago by 45k • written 11.0 years ago by 6.2k
679 results • Page 12 of 14
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