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1
vote
1
reply
53k
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Answer:
Answer: Get chromosome sizes from fasta file
14 months ago by
alejandrogzi
▴ 150
0
votes
0
replies
85k
views
Answer:
Answer: Sequence length from Fasta
14 months ago by
alejandrogzi
▴ 150
0
votes
1
reply
5.0k
views
Answer:
Answer: GFF3 to 12-column BED
21 months ago by
alejandrogzi
▴ 150
0
votes
0
replies
19k
views
Answer:
Answer: conversion of GFF3 formate to BED format
21 months ago by
alejandrogzi
▴ 150
1
vote
0
replies
1.1k
views
Tool:
gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert
gff
gtf
bed
21 months ago by
alejandrogzi
▴ 150
5
votes
2
replies
2.3k
views
Fastest way to convert BED to GTF/GFF with gene_ids?
gff
convert
bed
gtf
updated 23 months ago by
cmdcolin
★ 4.4k • written 23 months ago by
alejandrogzi
▴ 150
3
votes
1
reply
2.3k
views
Answer:
Answer: Fastest way to convert BED to GTF/GFF with gene_ids?
23 months ago by
alejandrogzi
▴ 150
4
votes
1
reply
1.3k
views
Tool:
NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
gene-annotation
exon-length
updated 16 months ago by
Alice
• 0 • written 24 months ago by
alejandrogzi
▴ 150
0
votes
0
replies
41k
views
Answer:
Answer: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
24 months ago by
alejandrogzi
▴ 150
0
votes
0
replies
2.0k
views
Answer:
Answer: Extracting exons using GenomicFeatures is different from manual extraction
24 months ago by
alejandrogzi
▴ 150
0
votes
0
replies
20k
views
Comment:
Comment: Converting from BED to SAF/GFF
2.1 years ago by
alejandrogzi
▴ 150
1
vote
1
reply
20k
views
Answer:
Answer: Converting from BED to SAF/GFF
2.1 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
8.0k
views
Comment:
Comment: Convert bed12 to GFF
2.1 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
4.5k
views
Comment:
Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
2.1 years ago by
alejandrogzi
▴ 150
1
vote
0
replies
34k
views
Answer:
Answer: How Do I Convert From Bed Format To Gff Format?
updated 2.0 years ago by
Ram
45k • written 2.1 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
29k
views
Comment:
Comment: Is there a tool that sorts gtf files?
2.1 years ago by
alejandrogzi
▴ 150
0
votes
1
reply
3.7k
views
Answer:
Answer: GTF files from Ensembl Releases 105 and 106 unsorted
2.1 years ago by
alejandrogzi
▴ 150
1
vote
0
replies
2.5k
views
Answer:
Answer: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
2.1 years ago by
alejandrogzi
▴ 150
2
votes
1
reply
29k
views
Answer:
Answer: Is there a tool that sorts gtf files?
2.1 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
8.0k
views
Answer:
Answer: How to order a gff3 file by coordinates
2.1 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
6.1k
views
Answer:
Answer: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
2.1 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
1.4k
views
Answer:
Answer: convert bed12 to sorted gtf
2.1 years ago by
alejandrogzi
▴ 150
2
votes
3
replies
8.0k
views
Answer:
Answer: Convert bed12 to GFF
2.2 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
2.1k
views
Answer:
Answer: How to change scaffold.fasta file or scaffold.bed file to GTF file?
2.2 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
1.3k
views
Answer:
Answer: Where to get a reference gene model in bed fomat? Is the only option converting
2.2 years ago by
alejandrogzi
▴ 150
0
votes
1
reply
4.5k
views
Comment:
Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
2.2 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
6.1k
views
Answer:
Answer: How to convert original BED file to a GTF ?
2.2 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
32k
views
Answer:
Answer: How To Convert Bed Format To Gtf?
2.2 years ago by
alejandrogzi
▴ 150
0
votes
0
replies
1.3k
views
Comment:
Comment: Differential transcript usage from Salmon data
2.8 years ago by
alejandrogzi
▴ 150
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