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Answer: Answer: Get chromosome sizes from fasta file
14 months ago by alejandrogzi ▴ 150
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85k
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Answer: Answer: Sequence length from Fasta
14 months ago by alejandrogzi ▴ 150
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5.0k
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Answer: Answer: GFF3 to 12-column BED
21 months ago by alejandrogzi ▴ 150
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19k
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Answer: Answer: conversion of GFF3 formate to BED format
21 months ago by alejandrogzi ▴ 150
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1.1k
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Tool: gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert gff gtf bed
21 months ago by alejandrogzi ▴ 150
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2
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2.3k
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Fastest way to convert BED to GTF/GFF with gene_ids?
gff convert bed gtf
updated 23 months ago by ★ 4.4k • written 23 months ago by ▴ 150
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2.3k
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Answer: Answer: Fastest way to convert BED to GTF/GFF with gene_ids?
23 months ago by alejandrogzi ▴ 150
4
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1
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1.3k
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Tool: NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
gene-annotation exon-length
updated 16 months ago by • 0 • written 24 months ago by ▴ 150
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41k
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Answer: Answer: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
24 months ago by alejandrogzi ▴ 150
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2.0k
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Answer: Answer: Extracting exons using GenomicFeatures is different from manual extraction
24 months ago by alejandrogzi ▴ 150
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20k
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Comment: Comment: Converting from BED to SAF/GFF
2.1 years ago by alejandrogzi ▴ 150
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20k
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Answer: Answer: Converting from BED to SAF/GFF
2.1 years ago by alejandrogzi ▴ 150
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8.0k
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Comment: Comment: Convert bed12 to GFF
2.1 years ago by alejandrogzi ▴ 150
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4.5k
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Comment: Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
2.1 years ago by alejandrogzi ▴ 150
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34k
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Answer: Answer: How Do I Convert From Bed Format To Gff Format?
updated 2.0 years ago by 45k • written 2.1 years ago by ▴ 150
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29k
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Comment: Comment: Is there a tool that sorts gtf files?
2.1 years ago by alejandrogzi ▴ 150
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3.7k
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Answer: Answer: GTF files from Ensembl Releases 105 and 106 unsorted
2.1 years ago by alejandrogzi ▴ 150
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0
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2.5k
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Answer: Answer: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
2.1 years ago by alejandrogzi ▴ 150
2
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1
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29k
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Answer: Answer: Is there a tool that sorts gtf files?
2.1 years ago by alejandrogzi ▴ 150
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8.0k
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Answer: Answer: How to order a gff3 file by coordinates
2.1 years ago by alejandrogzi ▴ 150
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6.1k
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Answer: Answer: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
2.1 years ago by alejandrogzi ▴ 150
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1.4k
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Answer: Answer: convert bed12 to sorted gtf
2.1 years ago by alejandrogzi ▴ 150
2
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3
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8.0k
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Answer: Answer: Convert bed12 to GFF
2.2 years ago by alejandrogzi ▴ 150
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2.1k
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Answer: Answer: How to change scaffold.fasta file or scaffold.bed file to GTF file?
2.2 years ago by alejandrogzi ▴ 150
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1.3k
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Answer: Answer: Where to get a reference gene model in bed fomat? Is the only option converting
2.2 years ago by alejandrogzi ▴ 150
0
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1
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4.5k
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Comment: Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
2.2 years ago by alejandrogzi ▴ 150
0
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0
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6.1k
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Answer: Answer: How to convert original BED file to a GTF ?
2.2 years ago by alejandrogzi ▴ 150
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0
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32k
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Answer: Answer: How To Convert Bed Format To Gtf?
2.2 years ago by alejandrogzi ▴ 150
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0
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1.3k
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Comment: Comment: Differential transcript usage from Salmon data
2.8 years ago by alejandrogzi ▴ 150
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