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765
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Answer: Answer: How to get output of annotated genes from ChIPseeker tool
20 days ago by kashiff007 ▴ 130
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1
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2.2k
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Comment: Comment: Where Does The Pvalue Comes From In Macs14
4 months ago by kashiff007 ▴ 130
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0
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478
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Bismark methylation for non-uniquely mapping BS-seq reads
DNA methylation bismark sequencing small RNAs
16 months ago by kashiff007 ▴ 130
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1
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662
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Comment: C: Extract last exon annotation from each mRNA
19 months ago by kashiff007 ▴ 130
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0
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662
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Comment: C: Extract last exon annotation from each mRNA
19 months ago by kashiff007 ▴ 130
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1
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662
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Comment: C: Extract last exon annotation from each mRNA
19 months ago by kashiff007 ▴ 130
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7
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662
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Extract last exon annotation from each mRNA
GFFUtils
19 months ago by kashiff007 ▴ 130
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1
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483
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Average length of each exon and intron
next-gen gtf gff bed bedtools
19 months ago by kashiff007 ▴ 130
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0
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3.8k
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Comment: C: Interpreting Bismark Methylation Extractor output
20 months ago by kashiff007 ▴ 130
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0
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13k
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Answer: A: Mismatch Option In Bowtie2
updated 21 months ago by 34k • written 5.7 years ago by ▴ 130
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5
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780
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Plot read density across a normalized gene model for its each exon/intron length
ChIP-Seq deeptools next-gen R python
updated 22 months ago by ★ 2.6k • written 22 months ago by ▴ 130
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780
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Comment: C: Plot read density across a normalized gene model for its each exon/intron length
22 months ago by kashiff007 ▴ 130
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0
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780
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Comment: C: Plot read density across a normalized gene model for its each exon/intron length
22 months ago by kashiff007 ▴ 130
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0
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20k
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Comment: C: Converstion of BED with scores into bigWig
updated 23 months ago by 34k • written 4.1 years ago by ▴ 130
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0
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2.0k
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Comment: C: Error :creating a custom BS genome pakage for Olea Europeae
2.0 years ago by kashiff007 ▴ 130
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2
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3.2k
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Answer: A: deseq2 or edgeR
2.1 years ago by kashiff007 ▴ 130
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1
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508
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Comment: C: Reporting methylation of both Cs and Gs, or only Cs
2.2 years ago by kashiff007 ▴ 130
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5
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508
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Reporting methylation of both Cs and Gs, or only Cs
Methylation bismark BS-seq next-gen sequencing
updated 2.2 years ago by 100k • written 2.2 years ago by ▴ 130
3
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1
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1.2k
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Answer: A: plot error x y length difference
updated 2.2 years ago by 34k • written 2.2 years ago by ▴ 130
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1
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1.2k
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Comment: C: plot error x y length difference
2.2 years ago by kashiff007 ▴ 130
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1
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741
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Comment: C: macs14 replicates treatment and final wiggle peak files
2.4 years ago by kashiff007 ▴ 130
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1
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741
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Comment: C: macs14 replicates treatment and final wiggle peak files
2.4 years ago by kashiff007 ▴ 130
4
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5
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741
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macs14 replicates treatment and final wiggle peak files
ChIP-Seq wig-file replicates macs14
updated 2.4 years ago by 11k • written 2.4 years ago by ▴ 130
3
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3
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592
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Faster way to run macs14
ChIP-Seq macs14 multicore multithread
2.4 years ago by kashiff007 ▴ 130
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0
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464
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Merge MNase-seq bam files from replicates.
next-gen MNase-seq bam-files merge replicates
2.6 years ago by kashiff007 ▴ 130
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1
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2.7k
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Answer: A: How to distinguish if a gene is a paralogue or an isoform?
2.7 years ago by kashiff007 ▴ 130
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0
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724
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Comment: C: Number of discovered genes in genome does not correspond with published annotati
2.7 years ago by kashiff007 ▴ 130
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1
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724
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Comment: C: Number of discovered genes in genome does not correspond with published annotati
2.7 years ago by kashiff007 ▴ 130
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1
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724
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Comment: A: Number of discovered genes in genome does not correspond with published annotati
2.7 years ago by kashiff007 ▴ 130
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0
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1.8k
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Answer: A: Convert Fasta format to MEME-motif format
2.7 years ago by kashiff007 ▴ 130
2
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2
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1.8k
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Convert Fasta format to MEME-motif format
MEME-suite FIMO motif fasta format conversion
2.7 years ago by kashiff007 ▴ 130
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0
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4.5k
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Answer: A: Is There Is Tool For Variable Tandem Repeats Finding?
2.7 years ago by kashiff007 ▴ 130
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0
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730
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Comment: C: How to subset S4 list with 5 Granges elements
2.7 years ago by kashiff007 ▴ 130
1
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0
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1.8k
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Comment: C: Multiple sequence alignment and visualisation for bacterial genomes
2.7 years ago by kashiff007 ▴ 130
1
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0
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1.8k
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Answer: A: Convert Fasta format to MEME-motif format
2.7 years ago by kashiff007 ▴ 130
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3.4k
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Comment: C: Finding Minisatellite Repeat Motives In Dna
3.4 years ago by kashiff007 ▴ 130
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0
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6.5k
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Comment: C: How to extract bigWig signal for a given bed file?
3.6 years ago by kashiff007 ▴ 130
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1
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6.5k
views
Comment: C: How to extract bigWig signal for a given bed file?
3.6 years ago by kashiff007 ▴ 130
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1
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6.5k
views
Comment: C: How to extract bigWig signal for a given bed file?
3.7 years ago by kashiff007 ▴ 130
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0
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1.8k
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Answer: A: Binning Exon And Plotting Read Densities (Bed Regions) With In And Around Binned
3.9 years ago by kashiff007 ▴ 130
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2
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4.3k
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Comment: C: MCScanX result problem
4.1 years ago by kashiff007 ▴ 130
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1
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4.3k
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Comment: C: MCScanX result problem
4.1 years ago by kashiff007 ▴ 130
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0
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1.1k
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Comment: C: Compare mus musculus and mus spretus genome structure annotation
4.1 years ago by kashiff007 ▴ 130
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1
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4.3k
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Comment: C: MCScanX result problem
4.1 years ago by kashiff007 ▴ 130
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0
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3.5k
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Answer: A: chrom.sizes computed locally
4.1 years ago by kashiff007 ▴ 130
3
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2
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1.6k
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fixedStep or variableStep Smoothening wig file
wig file wiggle smoothing
updated 4.1 years ago by 33k • written 4.1 years ago by ▴ 130
2
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1
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964
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Answer: A: Combining two columns in a tab-delimited file where there is a zero in one
4.1 years ago by kashiff007 ▴ 130
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1
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4.3k
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Answer: A: MCScanX result problem
4.1 years ago by kashiff007 ▴ 130
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0
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2.4k
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Answer: A: Question: Converting Blast Results/Output to FASTA format
4.1 years ago by kashiff007 ▴ 130
1
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1
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1.5k
views
How to generate pair-wise alignments for all the orthologous gene pairs at once?
alignment sequence blast
6.6 years ago by kashiff007 ▴ 130
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