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Comment: Comment: I want to merge gene sequences in fasta to create one genome from all cds region
28 days ago by kashiff007 ★ 1.9k
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1
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357
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Comment: Comment: Trim contamined reads for RNA-seq
28 days ago by kashiff007 ★ 1.9k
2
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1
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357
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Answer: Answer: Trim contamined reads for RNA-seq
28 days ago by kashiff007 ★ 1.9k
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1
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379
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Comment: Comment: Comparing expression of DEG gene in samples
8 months ago by kashiff007 ★ 1.9k
1
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0
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711
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Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
11 months ago by kashiff007 ★ 1.9k
1
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1
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711
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Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
11 months ago by kashiff007 ★ 1.9k
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2
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548
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Comment: Comment: VariantsToTable not produce output file
11 months ago by kashiff007 ★ 1.9k
1
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1
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506
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Comment: Comment: fastq-dump command
11 months ago by kashiff007 ★ 1.9k
1
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1
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880
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Comment: Comment: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
11 months ago by kashiff007 ★ 1.9k
1
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1
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998
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Answer: Answer: Is there a way to mark up specific genes in MA-plot?
11 months ago by kashiff007 ★ 1.9k
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0
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312
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Answer: Answer: How to calculate all possible chromatin interactions in a given sample?
11 months ago by kashiff007 ★ 1.9k
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0
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344
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Comment: Comment: sequence splitting
11 months ago by kashiff007 ★ 1.9k
0
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1
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506
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Comment: Comment: fastq-dump command
11 months ago by kashiff007 ★ 1.9k
3
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1
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596
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Comment: Comment: RNASeq deseq2
11 months ago by kashiff007 ★ 1.9k
1
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1
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562
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Comment: Comment: AnnotationForge and Error in FUN(X[[i]], ...) : data.frames in '...' cannot c
11 months ago by kashiff007 ★ 1.9k
1
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0
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455
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Answer: Answer: How can I split the names and a. acid sequences of certain organisms into column
11 months ago by kashiff007 ★ 1.9k
2
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0
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513
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Answer: Answer: Finding mutations by Ilumina rna-seq data
11 months ago by kashiff007 ★ 1.9k
0
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0
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925
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Answer: Answer: How can I bring similar columns from two different tables side by side?
11 months ago by kashiff007 ★ 1.9k
4
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1
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596
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Answer: Answer: RNASeq deseq2
11 months ago by kashiff007 ★ 1.9k
1
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1
reply
880
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Answer: Answer: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
11 months ago by kashiff007 ★ 1.9k
2
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0
replies
296
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Answer: Answer: How to increase space in Y axis label
12 months ago by kashiff007 ★ 1.9k
1
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1
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716
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Comment: Comment: Filtering Gene by mean expression
14 months ago by kashiff007 ★ 1.9k
2
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1
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1.1k
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Comment: Comment: featureCounts fragment count
14 months ago by kashiff007 ★ 1.9k
2
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1
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4.7k
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Comment: Comment: heatmap by r studio
15 months ago by kashiff007 ★ 1.9k
3
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0
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854
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Comment: Comment: Extract information from prokka gff files
15 months ago by kashiff007 ★ 1.9k
3
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1
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1.2k
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Comment: Comment: How to get/calculate coverage of a gene using bed file?
15 months ago by kashiff007 ★ 1.9k
3
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2
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1.8k
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Comment: Comment: using rsem sample.genome.STAR.genome.bam for calculating expression
15 months ago by kashiff007 ★ 1.9k
3
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1
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1.2k
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Comment: Comment: How to get/calculate coverage of a gene using bed file?
15 months ago by kashiff007 ★ 1.9k
2
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0
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386
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Comment: Comment: Sorting .bed file by genes size
15 months ago by kashiff007 ★ 1.9k
0
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0
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508
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Comment: Comment: ChIP-seq analysis differential peak analysis regarding spike-in
15 months ago by kashiff007 ★ 1.9k
0
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0
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436
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Answer: Answer: How to identify corresponding chromosomes and coordinates of a species for query
15 months ago by kashiff007 ★ 1.9k
1
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1
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613
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Answer: Answer: DNA methylation batch effect remove
15 months ago by kashiff007 ★ 1.9k
6
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0
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708
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Answer: Answer: Having a deletion coordinates how to know in which gene this is?
15 months ago by kashiff007 ★ 1.9k
3
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0
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588
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Answer: Answer: How select top enriched regions from plotHeatmap outputs?
15 months ago by kashiff007 ★ 1.9k
3
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0
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628
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Comment: Comment: Heatmap when having duplicated genes and samples
15 months ago by kashiff007 ★ 1.9k
6
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2
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628
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Answer: Answer: Heatmap when having duplicated genes and samples
15 months ago by kashiff007 ★ 1.9k
7
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1
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434
views
Compare genotype genome sequences at basepair level
Bioinformatics genotype comparative genomics
updated 15 months ago by 96k • written 15 months ago by ★ 1.9k
0
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1
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628
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Comment: Comment: Heatmap when having duplicated genes and samples
15 months ago by kashiff007 ★ 1.9k
5
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0
replies
2.2k
views
Answer: Answer: How to get output of annotated genes from ChIPseeker tool
16 months ago by kashiff007 ★ 1.9k
1
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1
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2.5k
views
Comment: Comment: Where Does The Pvalue Comes From In Macs14
19 months ago by kashiff007 ★ 1.9k
3
votes
0
replies
871
views
Bismark methylation for non-uniquely mapping BS-seq reads
DNA methylation bismark sequencing small RNAs
2.6 years ago by kashiff007 ★ 1.9k
1
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1
reply
1.1k
views
Comment: C: Extract last exon annotation from each mRNA
2.9 years ago by kashiff007 ★ 1.9k
2
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0
replies
1.1k
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Comment: C: Extract last exon annotation from each mRNA
2.9 years ago by kashiff007 ★ 1.9k
1
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1
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1.1k
views
Comment: C: Extract last exon annotation from each mRNA
2.9 years ago by kashiff007 ★ 1.9k
11
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7
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1.1k
views
Extract last exon annotation from each mRNA
GFFUtils
2.9 years ago by kashiff007 ★ 1.9k
3
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1
reply
864
views
Average length of each exon and intron
next-gen gtf gff bed bedtools
2.9 years ago by kashiff007 ★ 1.9k
1
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0
replies
6.7k
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Comment: C: Interpreting Bismark Methylation Extractor output
3.0 years ago by kashiff007 ★ 1.9k
3
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0
replies
15k
views
Answer: A: Mismatch Option In Bowtie2
updated 3.1 years ago by 38k • written 7.0 years ago by ★ 1.9k
9
votes
5
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1.4k
views
Plot read density across a normalized gene model for its each exon/intron length
ChIP-Seq deeptools next-gen R python
updated 3.2 years ago by 3.4k • written 3.2 years ago by ★ 1.9k
2
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0
replies
1.4k
views
Comment: C: Plot read density across a normalized gene model for its each exon/intron length
3.2 years ago by kashiff007 ★ 1.9k
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