Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.3k
views
Comment: Comment: Error when trying to create a heatmap with DESeq2
18 months ago by kashiff007 ★ 1.9k
0
votes
1
reply
1.5k
views
Comment: Comment: I want to merge gene sequences in fasta to create one genome from all cds region
2.3 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
1.3k
views
Comment: Comment: Trim contamined reads for RNA-seq
2.3 years ago by kashiff007 ★ 1.9k
2
votes
1
reply
1.3k
views
Answer: Answer: Trim contamined reads for RNA-seq
2.3 years ago by kashiff007 ★ 1.9k
0
votes
1
reply
904
views
Comment: Comment: Comparing expression of DEG gene in samples
3.0 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
3.6k
views
Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
3.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
3.6k
views
Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
3.2 years ago by kashiff007 ★ 1.9k
0
votes
2
replies
1.3k
views
Comment: Comment: VariantsToTable not produce output file
3.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
1.2k
views
Comment: Comment: fastq-dump command
3.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
2.6k
views
Comment: Comment: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
3.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
2.8k
views
Answer: Answer: Is there a way to mark up specific genes in MA-plot?
3.2 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
734
views
Answer: Answer: How to calculate all possible chromatin interactions in a given sample?
3.2 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
848
views
Comment: Comment: sequence splitting
3.2 years ago by kashiff007 ★ 1.9k
0
votes
1
reply
1.2k
views
Comment: Comment: fastq-dump command
3.2 years ago by kashiff007 ★ 1.9k
3
votes
1
reply
1.3k
views
Comment: Comment: RNASeq deseq2
3.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
1.7k
views
Comment: Comment: AnnotationForge and Error in FUN(X[[i]], ...) : data.frames in '...' cannot c
3.2 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
948
views
Answer: Answer: How can I split the names and a. acid sequences of certain organisms into column
3.2 years ago by kashiff007 ★ 1.9k
2
votes
0
replies
1.0k
views
Answer: Answer: Finding mutations by Ilumina rna-seq data
3.2 years ago by kashiff007 ★ 1.9k
0
votes
0
replies
1.8k
views
Answer: Answer: How can I bring similar columns from two different tables side by side?
3.2 years ago by kashiff007 ★ 1.9k
4
votes
1
reply
1.3k
views
Answer: Answer: RNASeq deseq2
3.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
2.6k
views
Answer: Answer: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
3.2 years ago by kashiff007 ★ 1.9k
2
votes
0
replies
1.3k
views
Answer: Answer: How to increase space in Y axis label
3.3 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
1.5k
views
Comment: Comment: Filtering Gene by mean expression
3.4 years ago by kashiff007 ★ 1.9k
2
votes
1
reply
2.4k
views
Comment: Comment: featureCounts fragment count
3.4 years ago by kashiff007 ★ 1.9k
2
votes
1
reply
12k
views
Comment: Comment: heatmap by r studio
3.5 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
2.1k
views
Comment: Comment: Extract information from prokka gff files
3.5 years ago by kashiff007 ★ 1.9k
3
votes
1
reply
2.5k
views
Comment: Comment: How to get/calculate coverage of a gene using bed file?
3.5 years ago by kashiff007 ★ 1.9k
3
votes
2
replies
4.9k
views
Comment: Comment: using rsem sample.genome.STAR.genome.bam for calculating expression
3.5 years ago by kashiff007 ★ 1.9k
3
votes
1
reply
2.5k
views
Comment: Comment: How to get/calculate coverage of a gene using bed file?
3.5 years ago by kashiff007 ★ 1.9k
2
votes
0
replies
825
views
Comment: Comment: Sorting .bed file by genes size
3.5 years ago by kashiff007 ★ 1.9k
0
votes
0
replies
1.2k
views
Comment: Comment: ChIP-seq analysis differential peak analysis regarding spike-in
3.5 years ago by kashiff007 ★ 1.9k
0
votes
0
replies
880
views
Answer: Answer: How to identify corresponding chromosomes and coordinates of a species for query
3.5 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
1.4k
views
Answer: Answer: DNA methylation batch effect remove
3.5 years ago by kashiff007 ★ 1.9k
6
votes
0
replies
1.6k
views
Answer: Answer: Having a deletion coordinates how to know in which gene this is?
3.5 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
1.4k
views
Answer: Answer: How select top enriched regions from plotHeatmap outputs?
3.5 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
1.5k
views
Comment: Comment: Heatmap when having duplicated genes and samples
3.5 years ago by kashiff007 ★ 1.9k
6
votes
2
replies
1.5k
views
Answer: Answer: Heatmap when having duplicated genes and samples
3.5 years ago by kashiff007 ★ 1.9k
7
votes
1
reply
989
views
Compare genotype genome sequences at basepair level
genotype comparative-genomics
updated 2.2 years ago by 45k • written 3.5 years ago by ★ 1.9k
0
votes
1
reply
1.5k
views
Comment: Comment: Heatmap when having duplicated genes and samples
3.5 years ago by kashiff007 ★ 1.9k
5
votes
0
replies
4.7k
views
Answer: Answer: How to get output of annotated genes from ChIPseeker tool
3.6 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
3.2k
views
Comment: Comment: Where Does The Pvalue Comes From In Macs14
3.9 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
1.3k
views
Bismark methylation for non-uniquely mapping BS-seq reads
DNA methylation bismark sequencing small RNAs
4.8 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
1.9k
views
Comment: C: Extract last exon annotation from each mRNA
5.1 years ago by kashiff007 ★ 1.9k
2
votes
0
replies
1.9k
views
Comment: C: Extract last exon annotation from each mRNA
5.1 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
1.9k
views
Comment: C: Extract last exon annotation from each mRNA
5.1 years ago by kashiff007 ★ 1.9k
11
votes
7
replies
1.9k
views
Extract last exon annotation from each mRNA
GFFUtils
5.1 years ago by kashiff007 ★ 1.9k
3
votes
1
reply
1.4k
views
Average length of each exon and intron
next-gen gtf gff bed bedtools
5.1 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
10k
views
Comment: C: Interpreting Bismark Methylation Extractor output
5.2 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
18k
views
Answer: A: Mismatch Option In Bowtie2
updated 5.3 years ago by 45k • written 9.2 years ago by ★ 1.9k
9
votes
5
replies
2.3k
views
Plot read density across a normalized gene model for its each exon/intron length
ChIP-Seq deeptools next-gen R python
updated 5.4 years ago by 4.1k • written 5.4 years ago by ★ 1.9k
90 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6