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Comment: Comment: I want to merge gene sequences in fasta to create one genome from all cds region
4 months ago by kashiff007 ★ 1.9k
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1
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441
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Comment: Comment: Trim contamined reads for RNA-seq
4 months ago by kashiff007 ★ 1.9k
2
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1
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441
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Answer: Answer: Trim contamined reads for RNA-seq
4 months ago by kashiff007 ★ 1.9k
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1
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421
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Comment: Comment: Comparing expression of DEG gene in samples
12 months ago by kashiff007 ★ 1.9k
1
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0
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1.1k
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Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
15 months ago by kashiff007 ★ 1.9k
1
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1
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1.1k
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Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
15 months ago by kashiff007 ★ 1.9k
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2
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625
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Comment: Comment: VariantsToTable not produce output file
15 months ago by kashiff007 ★ 1.9k
1
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1
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567
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Comment: Comment: fastq-dump command
15 months ago by kashiff007 ★ 1.9k
1
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1
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1.1k
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Comment: Comment: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
15 months ago by kashiff007 ★ 1.9k
1
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1
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1.3k
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Answer: Answer: Is there a way to mark up specific genes in MA-plot?
15 months ago by kashiff007 ★ 1.9k
1
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0
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345
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Answer: Answer: How to calculate all possible chromatin interactions in a given sample?
15 months ago by kashiff007 ★ 1.9k
1
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0
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386
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Comment: Comment: sequence splitting
15 months ago by kashiff007 ★ 1.9k
0
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1
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567
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Comment: Comment: fastq-dump command
15 months ago by kashiff007 ★ 1.9k
3
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1
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677
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Comment: Comment: RNASeq deseq2
15 months ago by kashiff007 ★ 1.9k
1
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1
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783
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Comment: Comment: AnnotationForge and Error in FUN(X[[i]], ...) : data.frames in '...' cannot c
15 months ago by kashiff007 ★ 1.9k
1
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0
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496
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Answer: Answer: How can I split the names and a. acid sequences of certain organisms into column
15 months ago by kashiff007 ★ 1.9k
2
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0
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560
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Answer: Answer: Finding mutations by Ilumina rna-seq data
15 months ago by kashiff007 ★ 1.9k
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0
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1.0k
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Answer: Answer: How can I bring similar columns from two different tables side by side?
15 months ago by kashiff007 ★ 1.9k
4
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1
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677
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Answer: Answer: RNASeq deseq2
15 months ago by kashiff007 ★ 1.9k
1
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1
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1.1k
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Answer: Answer: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
15 months ago by kashiff007 ★ 1.9k
2
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0
replies
337
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Answer: Answer: How to increase space in Y axis label
16 months ago by kashiff007 ★ 1.9k
1
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1
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809
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Comment: Comment: Filtering Gene by mean expression
18 months ago by kashiff007 ★ 1.9k
2
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1
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1.3k
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Comment: Comment: featureCounts fragment count
18 months ago by kashiff007 ★ 1.9k
2
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1
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6.1k
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Comment: Comment: heatmap by r studio
18 months ago by kashiff007 ★ 1.9k
3
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0
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1.1k
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Comment: Comment: Extract information from prokka gff files
18 months ago by kashiff007 ★ 1.9k
3
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1
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1.5k
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Comment: Comment: How to get/calculate coverage of a gene using bed file?
18 months ago by kashiff007 ★ 1.9k
3
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2
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2.3k
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Comment: Comment: using rsem sample.genome.STAR.genome.bam for calculating expression
18 months ago by kashiff007 ★ 1.9k
3
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1
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1.5k
views
Comment: Comment: How to get/calculate coverage of a gene using bed file?
18 months ago by kashiff007 ★ 1.9k
2
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0
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436
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Comment: Comment: Sorting .bed file by genes size
18 months ago by kashiff007 ★ 1.9k
0
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0
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581
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Comment: Comment: ChIP-seq analysis differential peak analysis regarding spike-in
18 months ago by kashiff007 ★ 1.9k
0
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0
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478
views
Answer: Answer: How to identify corresponding chromosomes and coordinates of a species for query
18 months ago by kashiff007 ★ 1.9k
1
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1
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717
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Answer: Answer: DNA methylation batch effect remove
18 months ago by kashiff007 ★ 1.9k
6
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0
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790
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Answer: Answer: Having a deletion coordinates how to know in which gene this is?
19 months ago by kashiff007 ★ 1.9k
3
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0
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688
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Answer: Answer: How select top enriched regions from plotHeatmap outputs?
19 months ago by kashiff007 ★ 1.9k
3
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0
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732
views
Comment: Comment: Heatmap when having duplicated genes and samples
19 months ago by kashiff007 ★ 1.9k
6
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2
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732
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Answer: Answer: Heatmap when having duplicated genes and samples
19 months ago by kashiff007 ★ 1.9k
7
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1
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509
views
Compare genotype genome sequences at basepair level
genotype comparative-genomics
updated 3 months ago by 39k • written 19 months ago by ★ 1.9k
0
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1
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732
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Comment: Comment: Heatmap when having duplicated genes and samples
19 months ago by kashiff007 ★ 1.9k
5
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0
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2.6k
views
Answer: Answer: How to get output of annotated genes from ChIPseeker tool
20 months ago by kashiff007 ★ 1.9k
1
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1
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2.6k
views
Comment: Comment: Where Does The Pvalue Comes From In Macs14
23 months ago by kashiff007 ★ 1.9k
3
votes
0
replies
927
views
Bismark methylation for non-uniquely mapping BS-seq reads
DNA methylation bismark sequencing small RNAs
2.9 years ago by kashiff007 ★ 1.9k
1
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1
reply
1.2k
views
Comment: C: Extract last exon annotation from each mRNA
3.2 years ago by kashiff007 ★ 1.9k
2
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0
replies
1.2k
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Comment: C: Extract last exon annotation from each mRNA
3.2 years ago by kashiff007 ★ 1.9k
1
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1
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1.2k
views
Comment: C: Extract last exon annotation from each mRNA
3.2 years ago by kashiff007 ★ 1.9k
11
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7
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1.2k
views
Extract last exon annotation from each mRNA
GFFUtils
3.2 years ago by kashiff007 ★ 1.9k
3
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1
reply
944
views
Average length of each exon and intron
next-gen gtf gff bed bedtools
3.2 years ago by kashiff007 ★ 1.9k
1
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0
replies
7.3k
views
Comment: C: Interpreting Bismark Methylation Extractor output
3.3 years ago by kashiff007 ★ 1.9k
3
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0
replies
16k
views
Answer: A: Mismatch Option In Bowtie2
updated 3.4 years ago by 39k • written 7.3 years ago by ★ 1.9k
9
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5
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1.5k
views
Plot read density across a normalized gene model for its each exon/intron length
ChIP-Seq deeptools next-gen R python
updated 3.5 years ago by 3.6k • written 3.5 years ago by ★ 1.9k
2
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0
replies
1.5k
views
Comment: C: Plot read density across a normalized gene model for its each exon/intron length
3.5 years ago by kashiff007 ★ 1.9k
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