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Comment: Comment: Error when trying to create a heatmap with DESeq2
14 months ago by kashiff007 ★ 1.9k
0
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1
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1.4k
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Comment: Comment: I want to merge gene sequences in fasta to create one genome from all cds region
2.0 years ago by kashiff007 ★ 1.9k
1
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1
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1.1k
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Comment: Comment: Trim contamined reads for RNA-seq
2.0 years ago by kashiff007 ★ 1.9k
2
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1
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1.1k
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Answer: Answer: Trim contamined reads for RNA-seq
2.0 years ago by kashiff007 ★ 1.9k
0
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1
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792
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Comment: Comment: Comparing expression of DEG gene in samples
2.7 years ago by kashiff007 ★ 1.9k
1
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0
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3.1k
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Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
2.9 years ago by kashiff007 ★ 1.9k
1
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1
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3.1k
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Comment: Comment: Same sequencing sample in multiple lanes. How to analyse it?
2.9 years ago by kashiff007 ★ 1.9k
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2
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1.2k
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Comment: Comment: VariantsToTable not produce output file
2.9 years ago by kashiff007 ★ 1.9k
1
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1
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1.0k
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Comment: Comment: fastq-dump command
2.9 years ago by kashiff007 ★ 1.9k
1
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1
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2.2k
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Comment: Comment: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
2.9 years ago by kashiff007 ★ 1.9k
1
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1
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2.5k
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Answer: Answer: Is there a way to mark up specific genes in MA-plot?
2.9 years ago by kashiff007 ★ 1.9k
1
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0
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644
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Answer: Answer: How to calculate all possible chromatin interactions in a given sample?
2.9 years ago by kashiff007 ★ 1.9k
1
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0
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752
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Comment: Comment: sequence splitting
2.9 years ago by kashiff007 ★ 1.9k
0
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1
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1.0k
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Comment: Comment: fastq-dump command
2.9 years ago by kashiff007 ★ 1.9k
3
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1
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1.2k
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Comment: Comment: RNASeq deseq2
2.9 years ago by kashiff007 ★ 1.9k
1
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1
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1.5k
views
Comment: Comment: AnnotationForge and Error in FUN(X[[i]], ...) : data.frames in '...' cannot c
2.9 years ago by kashiff007 ★ 1.9k
1
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0
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848
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Answer: Answer: How can I split the names and a. acid sequences of certain organisms into column
2.9 years ago by kashiff007 ★ 1.9k
2
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0
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940
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Answer: Answer: Finding mutations by Ilumina rna-seq data
2.9 years ago by kashiff007 ★ 1.9k
0
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0
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1.6k
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Answer: Answer: How can I bring similar columns from two different tables side by side?
2.9 years ago by kashiff007 ★ 1.9k
4
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1
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1.2k
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Answer: Answer: RNASeq deseq2
2.9 years ago by kashiff007 ★ 1.9k
1
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1
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2.2k
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Answer: Answer: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
2.9 years ago by kashiff007 ★ 1.9k
2
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0
replies
1.0k
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Answer: Answer: How to increase space in Y axis label
3.0 years ago by kashiff007 ★ 1.9k
1
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1
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1.4k
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Comment: Comment: Filtering Gene by mean expression
3.2 years ago by kashiff007 ★ 1.9k
2
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1
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2.1k
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Comment: Comment: featureCounts fragment count
3.2 years ago by kashiff007 ★ 1.9k
2
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1
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11k
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Comment: Comment: heatmap by r studio
3.2 years ago by kashiff007 ★ 1.9k
3
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0
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2.0k
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Comment: Comment: Extract information from prokka gff files
3.2 years ago by kashiff007 ★ 1.9k
3
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1
reply
2.3k
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Comment: Comment: How to get/calculate coverage of a gene using bed file?
3.2 years ago by kashiff007 ★ 1.9k
3
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2
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4.5k
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Comment: Comment: using rsem sample.genome.STAR.genome.bam for calculating expression
3.2 years ago by kashiff007 ★ 1.9k
3
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1
reply
2.3k
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Comment: Comment: How to get/calculate coverage of a gene using bed file?
3.2 years ago by kashiff007 ★ 1.9k
2
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0
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745
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Comment: Comment: Sorting .bed file by genes size
3.2 years ago by kashiff007 ★ 1.9k
0
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0
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1.1k
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Comment: Comment: ChIP-seq analysis differential peak analysis regarding spike-in
3.2 years ago by kashiff007 ★ 1.9k
0
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0
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799
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Answer: Answer: How to identify corresponding chromosomes and coordinates of a species for query
3.2 years ago by kashiff007 ★ 1.9k
1
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1
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1.2k
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Answer: Answer: DNA methylation batch effect remove
3.2 years ago by kashiff007 ★ 1.9k
6
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0
replies
1.4k
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Answer: Answer: Having a deletion coordinates how to know in which gene this is?
3.2 years ago by kashiff007 ★ 1.9k
3
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0
replies
1.2k
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Answer: Answer: How select top enriched regions from plotHeatmap outputs?
3.2 years ago by kashiff007 ★ 1.9k
3
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0
replies
1.3k
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Comment: Comment: Heatmap when having duplicated genes and samples
3.2 years ago by kashiff007 ★ 1.9k
6
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2
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1.3k
views
Answer: Answer: Heatmap when having duplicated genes and samples
3.2 years ago by kashiff007 ★ 1.9k
7
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1
reply
893
views
Compare genotype genome sequences at basepair level
genotype comparative-genomics
updated 23 months ago by 44k • written 3.2 years ago by ★ 1.9k
0
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1
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1.3k
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Comment: Comment: Heatmap when having duplicated genes and samples
3.2 years ago by kashiff007 ★ 1.9k
5
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0
replies
4.3k
views
Answer: Answer: How to get output of annotated genes from ChIPseeker tool
3.3 years ago by kashiff007 ★ 1.9k
1
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1
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3.1k
views
Comment: Comment: Where Does The Pvalue Comes From In Macs14
3.6 years ago by kashiff007 ★ 1.9k
3
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0
replies
1.3k
views
Bismark methylation for non-uniquely mapping BS-seq reads
DNA methylation bismark sequencing small RNAs
4.6 years ago by kashiff007 ★ 1.9k
1
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1
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1.8k
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Comment: C: Extract last exon annotation from each mRNA
4.8 years ago by kashiff007 ★ 1.9k
2
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0
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1.8k
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Comment: C: Extract last exon annotation from each mRNA
4.8 years ago by kashiff007 ★ 1.9k
1
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1
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1.8k
views
Comment: C: Extract last exon annotation from each mRNA
4.8 years ago by kashiff007 ★ 1.9k
11
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7
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1.8k
views
Extract last exon annotation from each mRNA
GFFUtils
4.8 years ago by kashiff007 ★ 1.9k
3
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1
reply
1.3k
views
Average length of each exon and intron
next-gen gtf gff bed bedtools
4.8 years ago by kashiff007 ★ 1.9k
1
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0
replies
9.8k
views
Comment: C: Interpreting Bismark Methylation Extractor output
5.0 years ago by kashiff007 ★ 1.9k
3
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0
replies
17k
views
Answer: A: Mismatch Option In Bowtie2
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.9k
9
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5
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2.1k
views
Plot read density across a normalized gene model for its each exon/intron length
ChIP-Seq deeptools next-gen R python
updated 5.1 years ago by 4.1k • written 5.1 years ago by ★ 1.9k
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