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0
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918
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Comment:
Comment: Error when trying to create a heatmap with DESeq2
10 months ago by
kashiff007
★ 1.9k
0
votes
1
reply
1.2k
views
Comment:
Comment: I want to merge gene sequences in fasta to create one genome from all cds region
19 months ago by
kashiff007
★ 1.9k
1
vote
1
reply
927
views
Comment:
Comment: Trim contamined reads for RNA-seq
19 months ago by
kashiff007
★ 1.9k
2
votes
1
reply
927
views
Answer:
Answer: Trim contamined reads for RNA-seq
19 months ago by
kashiff007
★ 1.9k
0
votes
1
reply
729
views
Comment:
Comment: Comparing expression of DEG gene in samples
2.3 years ago by
kashiff007
★ 1.9k
1
vote
0
replies
2.6k
views
Comment:
Comment: Same sequencing sample in multiple lanes. How to analyse it?
2.5 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
2.6k
views
Comment:
Comment: Same sequencing sample in multiple lanes. How to analyse it?
2.5 years ago by
kashiff007
★ 1.9k
0
votes
2
replies
1.1k
views
Comment:
Comment: VariantsToTable not produce output file
2.5 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
931
views
Comment:
Comment: fastq-dump command
2.5 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
1.9k
views
Comment:
Comment: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
2.5 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
2.3k
views
Answer:
Answer: Is there a way to mark up specific genes in MA-plot?
2.5 years ago by
kashiff007
★ 1.9k
1
vote
0
replies
586
views
Answer:
Answer: How to calculate all possible chromatin interactions in a given sample?
2.5 years ago by
kashiff007
★ 1.9k
1
vote
0
replies
660
views
Comment:
Comment: sequence splitting
2.5 years ago by
kashiff007
★ 1.9k
0
votes
1
reply
931
views
Comment:
Comment: fastq-dump command
2.5 years ago by
kashiff007
★ 1.9k
3
votes
1
reply
1.1k
views
Comment:
Comment: RNASeq deseq2
2.5 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
1.4k
views
Comment:
Comment: AnnotationForge and Error in FUN(X[[i]], ...) : data.frames in '...' cannot c
2.5 years ago by
kashiff007
★ 1.9k
1
vote
0
replies
778
views
Answer:
Answer: How can I split the names and a. acid sequences of certain organisms into column
2.5 years ago by
kashiff007
★ 1.9k
2
votes
0
replies
868
views
Answer:
Answer: Finding mutations by Ilumina rna-seq data
2.5 years ago by
kashiff007
★ 1.9k
0
votes
0
replies
1.5k
views
Answer:
Answer: How can I bring similar columns from two different tables side by side?
2.5 years ago by
kashiff007
★ 1.9k
4
votes
1
reply
1.1k
views
Answer:
Answer: RNASeq deseq2
2.5 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
1.9k
views
Answer:
Answer: bedGraphtoBigWig- Converting INSDC chromosome names to UCSC names
2.5 years ago by
kashiff007
★ 1.9k
2
votes
0
replies
724
views
Answer:
Answer: How to increase space in Y axis label
2.6 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
1.3k
views
Comment:
Comment: Filtering Gene by mean expression
2.8 years ago by
kashiff007
★ 1.9k
2
votes
1
reply
2.0k
views
Comment:
Comment: featureCounts fragment count
2.8 years ago by
kashiff007
★ 1.9k
2
votes
1
reply
10k
views
Comment:
Comment: heatmap by r studio
2.8 years ago by
kashiff007
★ 1.9k
3
votes
0
replies
1.8k
views
Comment:
Comment: Extract information from prokka gff files
2.8 years ago by
kashiff007
★ 1.9k
3
votes
1
reply
2.2k
views
Comment:
Comment: How to get/calculate coverage of a gene using bed file?
2.8 years ago by
kashiff007
★ 1.9k
3
votes
2
replies
4.1k
views
Comment:
Comment: using rsem sample.genome.STAR.genome.bam for calculating expression
2.8 years ago by
kashiff007
★ 1.9k
3
votes
1
reply
2.2k
views
Comment:
Comment: How to get/calculate coverage of a gene using bed file?
2.8 years ago by
kashiff007
★ 1.9k
2
votes
0
replies
685
views
Comment:
Comment: Sorting .bed file by genes size
2.8 years ago by
kashiff007
★ 1.9k
0
votes
0
replies
992
views
Comment:
Comment: ChIP-seq analysis differential peak analysis regarding spike-in
2.8 years ago by
kashiff007
★ 1.9k
0
votes
0
replies
740
views
Answer:
Answer: How to identify corresponding chromosomes and coordinates of a species for query
2.8 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
1.2k
views
Answer:
Answer: DNA methylation batch effect remove
2.8 years ago by
kashiff007
★ 1.9k
6
votes
0
replies
1.3k
views
Answer:
Answer: Having a deletion coordinates how to know in which gene this is?
2.8 years ago by
kashiff007
★ 1.9k
3
votes
0
replies
1.2k
views
Answer:
Answer: How select top enriched regions from plotHeatmap outputs?
2.8 years ago by
kashiff007
★ 1.9k
3
votes
0
replies
1.2k
views
Comment:
Comment: Heatmap when having duplicated genes and samples
2.8 years ago by
kashiff007
★ 1.9k
6
votes
2
replies
1.2k
views
Answer:
Answer: Heatmap when having duplicated genes and samples
2.8 years ago by
kashiff007
★ 1.9k
7
votes
1
reply
827
views
Compare genotype genome sequences at basepair level
genotype
comparative-genomics
updated 19 months ago by
Ram
44k • written 2.8 years ago by
kashiff007
★ 1.9k
0
votes
1
reply
1.2k
views
Comment:
Comment: Heatmap when having duplicated genes and samples
2.8 years ago by
kashiff007
★ 1.9k
5
votes
0
replies
4.0k
views
Answer:
Answer: How to get output of annotated genes from ChIPseeker tool
2.9 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
3.0k
views
Comment:
Comment: Where Does The Pvalue Comes From In Macs14
3.2 years ago by
kashiff007
★ 1.9k
3
votes
0
replies
1.2k
views
Bismark methylation for non-uniquely mapping BS-seq reads
DNA methylation
bismark
sequencing
small RNAs
4.2 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
1.6k
views
Comment:
C: Extract last exon annotation from each mRNA
4.4 years ago by
kashiff007
★ 1.9k
2
votes
0
replies
1.6k
views
Comment:
C: Extract last exon annotation from each mRNA
4.4 years ago by
kashiff007
★ 1.9k
1
vote
1
reply
1.6k
views
Comment:
C: Extract last exon annotation from each mRNA
4.4 years ago by
kashiff007
★ 1.9k
11
votes
7
replies
1.6k
views
Extract last exon annotation from each mRNA
GFFUtils
4.4 years ago by
kashiff007
★ 1.9k
3
votes
1
reply
1.3k
views
Average length of each exon and intron
next-gen
gtf
gff
bed
bedtools
4.5 years ago by
kashiff007
★ 1.9k
1
vote
0
replies
9.3k
views
Comment:
C: Interpreting Bismark Methylation Extractor output
4.6 years ago by
kashiff007
★ 1.9k
3
votes
0
replies
17k
views
Answer:
A: Mismatch Option In Bowtie2
updated 4.6 years ago by
Ram
44k • written 8.6 years ago by
kashiff007
★ 1.9k
9
votes
5
replies
2.0k
views
Plot read density across a normalized gene model for its each exon/intron length
ChIP-Seq
deeptools
next-gen
R
python
updated 4.7 years ago by
benformatics
4.0k • written 4.7 years ago by
kashiff007
★ 1.9k
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