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Comment: Comment: Analize RNA-seq data using Hisat2
10 months ago by biofalconch ★ 1.1k
0
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1
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2.3k
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Comment: Comment: How to create a Seurat object from the `xxx_metadata.txt.gz ` and `xxx_counts.t
11 months ago by biofalconch ★ 1.1k
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1
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1.2k
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Comment: Comment: Transcript quantification
11 months ago by biofalconch ★ 1.1k
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0
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503
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Comment: Comment: Best practice for normalizing sequencing depth for differential miRNA expression
11 months ago by biofalconch ★ 1.1k
1
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0
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567
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Answer: Answer: Need help regarding miRNA data analysis
11 months ago by biofalconch ★ 1.1k
0
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1
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648
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Answer: Answer: How to draw a picture like this?
11 months ago by biofalconch ★ 1.1k
2
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0
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627
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Comment: Comment: Seurat
11 months ago by biofalconch ★ 1.1k
2
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1
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450
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Answer: Answer: conda env error?
11 months ago by biofalconch ★ 1.1k
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0
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3.6k
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Comment: Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
11 months ago by biofalconch ★ 1.1k
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0
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3.6k
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Answer: Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
11 months ago by biofalconch ★ 1.1k
0
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0
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391
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Comment: Comment: What happens if you run an already soft-masked sequence on RepeatMasker again?
14 months ago by biofalconch ★ 1.1k
2
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1
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2.0k
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Comment: Comment: Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
15 months ago by biofalconch ★ 1.1k
0
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1
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4.2k
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Comment: Comment: Cellranger count pipestance failed: The read lengths are incompatible with all t
23 months ago by biofalconch ★ 1.1k
0
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0
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631
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Comment: Comment: Merging bam files
23 months ago by biofalconch ★ 1.1k
0
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1
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677
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Answer: Answer: HMM Profile-Profile alignment
2.0 years ago by biofalconch ★ 1.1k
1
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1
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1.2k
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Answer: Answer: Featurecounts
2.1 years ago by biofalconch ★ 1.1k
1
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1
reply
594
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cd-hit-est obscure parameter -b
cd-hit-est
updated 2.1 years ago by ★ 2.2k • written 2.1 years ago by ★ 1.1k
1
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0
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869
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Answer: Answer: miRNA help
2.1 years ago by biofalconch ★ 1.1k
0
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0
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977
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Comment: Comment: Can’t run trinity - Java version
2.7 years ago by biofalconch ★ 1.1k
0
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0
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480
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Comment: Comment: Reading miRNA expression
2.8 years ago by biofalconch ★ 1.1k
0
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0
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675
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Comment: Comment: update fasta header and gff3 file
3.0 years ago by biofalconch ★ 1.1k
1
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0
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3.7k
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Answer: A: How to visualise KEGG pathway?
3.9 years ago by biofalconch ★ 1.1k
0
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0
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1.6k
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Comment: C: DESeq DataSet from HTSeqCount Error
3.9 years ago by biofalconch ★ 1.1k
2
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1
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591
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Answer: C: Convert .sam to .bam without producing writing .sam file to storage space
3.9 years ago by biofalconch ★ 1.1k
0
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0
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656
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Comment: C: How do determine the ratio of mRNA:rRNA:ncRNA in an RNA-seq dataset?
4.2 years ago by biofalconch ★ 1.1k
1
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1
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3.6k
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Comment: C: Differential gene expression, starting from RSEM expected count values.
4.2 years ago by biofalconch ★ 1.1k
0
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1
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906
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Comment: C: miRDeep2 stops at 'excising precursors' step..
4.3 years ago by biofalconch ★ 1.1k
2
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0
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2.3k
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Answer: A: How are GO biological processes and pathways related?
4.3 years ago by biofalconch ★ 1.1k
1
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0
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1.8k
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Comment: C: How to convert a text file into gtf file?\
4.3 years ago by biofalconch ★ 1.1k
0
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0
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3.0k
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Answer: A: Use PWM from CISBP-rna to find motif with MEME (FIMO)
4.6 years ago by biofalconch ★ 1.1k
1
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0
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1.9k
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Answer: C: topGo analysis with PANTHER.db
4.6 years ago by biofalconch ★ 1.1k
0
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1
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1.1k
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Comment: C: genome length and kmer size
4.6 years ago by biofalconch ★ 1.1k
0
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0
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742
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Comment: C: parent GO terms
4.6 years ago by biofalconch ★ 1.1k
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0
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4.4k
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Comment: C: Transcriptome Assembly with rnaSPAdes
4.8 years ago by biofalconch ★ 1.1k
-1
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0
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1.7k
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Comment: C: PSI-BLAST out put is empty
4.8 years ago by biofalconch ★ 1.1k
0
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1
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871
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Comment: C: Detection of duplicated regions in RNA-seq data
4.8 years ago by biofalconch ★ 1.1k
0
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1
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1.4k
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Comment: C: Specific question about the strands in Illumina paired-end libraries
4.8 years ago by biofalconch ★ 1.1k
1
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2
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1.3k
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Quantifying overlapping RNA-seq paired-end reads
RNA-Seq
updated 5.8 years ago by ▴ 10 • written 5.9 years ago by ★ 1.1k
0
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0
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7.7k
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Comment: C: Determine GO hierarchy in a list of GO terms
6.3 years ago by biofalconch ★ 1.1k
4
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1
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7.7k
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Answer: C: Determine GO hierarchy in a list of GO terms
6.3 years ago by biofalconch ★ 1.1k
2
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0
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2.5k
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Comment: C: Sleuth Error: System is computationally singular
6.3 years ago by biofalconch ★ 1.1k
0
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1
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1.7k
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Comment: C: Search for possible miRNAs based on acquired transcript sequence
6.3 years ago by biofalconch ★ 1.1k
0
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0
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1.9k
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Comment: C: What shall I do with this RNA-seq data that have no replicates?
6.4 years ago by biofalconch ★ 1.1k
0
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0
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1.6k
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Comment: C: Doing RNA folding online for 1200 nt long sequence
6.4 years ago by biofalconch ★ 1.1k
0
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1
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1.3k
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Comment: C: Bacterial RNA seq
6.5 years ago by biofalconch ★ 1.1k
1
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0
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2.8k
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Comment: C: Identifying miRNA, RNA-binding sites in UTRs
6.5 years ago by biofalconch ★ 1.1k
0
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0
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3.7k
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Comment: C: PCA Tools to analyse RNA-seq data
6.5 years ago by biofalconch ★ 1.1k
2
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2
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5.3k
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Answer: C: Tools for finding gene clusters in RNA-seq differential expression data?
6.5 years ago by biofalconch ★ 1.1k
1
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1
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2.9k
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Comment: C: Sequence retrieval from miRBase using miRBase sequence ids
6.5 years ago by biofalconch ★ 1.1k
1
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0
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2.3k
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Comment: C: edgeR steps for gene expressions
6.5 years ago by biofalconch ★ 1.1k
215 results • Page 3 of 5
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