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27
votes
11
replies
27k
views
8 follow
Get gene names from rs SNP ids
SNP rs gene
updated 2.1 years ago by 43k • written 9.7 years ago by ▴ 960
10
votes
10
replies
9.1k
views
How do I compute the effective genome size?
ChIP-Seq
updated 19 months ago by 43k • written 8.6 years ago by ▴ 960
4
votes
1
reply
3.0k
views
R's GO.db and Python's go_db gives different ancestors, which is correct?
Gene-Ontology
updated 19 months ago by 43k • written 8.7 years ago by ▴ 960
0
votes
1
reply
1.8k
views
QC for broad domain chip-seq data?
ChIP-Seq
updated 21 months ago by 43k • written 8.2 years ago by ▴ 960
2
votes
2
replies
1.6k
views
Metrics for exploring the parameter space of broad domain chip-seq finders?
ChIP-Seq
updated 8.2 years ago by 14k • written 8.2 years ago by ▴ 960
1
vote
1
reply
2.1k
views
How do I use bio.KEGG.REST.kegg_convert?
kegg biopython
updated 20 months ago by 43k • written 8.5 years ago by ▴ 960
1
vote
2
replies
2.7k
views
How do I interpret the adapter output from FastQC?
FastQC
updated 19 months ago by 43k • written 8.6 years ago by ▴ 960
12
votes
4
replies
1.9k
views
What are the benefits and risks of releasing my very beta software with a short preprint?
preprint
updated 19 months ago by 43k • written 8.6 years ago by ▴ 960
5
votes
8
replies
5.0k
views
Mapping refseq transcripts to encoded proteins (NM_ to NP_)
refseq
updated 18 months ago by 43k • written 9.7 years ago by ▴ 960
3
votes
3
replies
3.1k
views
Iterate over go terms in go hierachies "BP", "MF", "CC"
gene-ontology go
updated 15 months ago by 43k • written 8.9 years ago by ▴ 960
3
votes
3
replies
2.1k
views
GO.db: why does GOCCCHILDREN$"GO:0005575" work, but not GOCCCHILDREN$go when go="GO:0005575"
r GO.db
updated 16 months ago by 43k • written 8.9 years ago by ▴ 960
8
votes
9
replies
1.6k
views
Terminology: for genomes you call allels, but on the epigenome you call ____?
epigenetics
updated 14 months ago by 43k • written 9.0 years ago by ▴ 960
8
votes
16
replies
2.1k
views
Different filter settings to different files in same run of samtools
samtools
updated 22 months ago by 43k • written 9.0 years ago by ▴ 960
0
votes
5
replies
3.2k
views
Bam-files: How to know which reads are actual pairs?
samtools paired-end bam
updated 22 months ago by 43k • written 9.0 years ago by ▴ 960
8
votes
2
replies
1.7k
views
Publishing improved versions of algorithms - ethics and norms.
publishing
updated 23 months ago by 43k • written 9.1 years ago by ▴ 960
2
votes
4
replies
4.9k
views
Blacklisted regions for hg38?
blacklist
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 960
2
votes
7
replies
2.8k
views
Bug in bx-python maf?
bx maf
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 960
3
votes
3
replies
3.9k
views
Where can I find mirna primary transcripts and their genomic coordinates?
mirbase mirna
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 960
6
votes
2
replies
4.6k
views
Are gencode gtfs really one-indexed for the start- and zero-indexed for the end-coordinate?
gencode gtf
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 960
0
votes
0
replies
1.4k
views
Some genotypes listed on ensembl that I cannot find?
ensembl
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 960
0
votes
7
replies
4.0k
views
How to update a 23andme, vcf or plink bed file to hg38?
23andme
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 960
0
votes
2
replies
1.9k
views
Comparing SNPs from different chips and genome versions as long as they have the same name?
SNP
updated 9.6 years ago by ▴ 490 • written 9.6 years ago by ▴ 960
22 results • Page 1 of 1
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