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Comment: C: How To Convert Gencode Gtf Into Bed Format ?
8.5 years ago by tiago211287 ★ 1.5k
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2.3k
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Comment: C: Reads length mouse RNA-seq
8.6 years ago by tiago211287 ★ 1.5k
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1
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6.5k
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Comment: C: HTSeq-count paired-end --stranded=yes gives less counts than --stranded=no
8.8 years ago by tiago211287 ★ 1.5k
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0
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2.1k
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Comment: C: Trinity installation Error
8.8 years ago by tiago211287 ★ 1.5k
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2.8k
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Comment: C: Tophat2 mapping takes a lot of time
8.8 years ago by tiago211287 ★ 1.5k
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0
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9.7k
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Comment: C: STAR Killing Run When Trying To Build An Annotated Reference Genome
8.8 years ago by tiago211287 ★ 1.5k
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9.7k
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Comment: C: STAR Killing Run When Trying To Build An Annotated Reference Genome
8.8 years ago by tiago211287 ★ 1.5k
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0
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4.0k
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Comment: C: GTF format that's acceptable for Tophat/Cufflinks
8.8 years ago by tiago211287 ★ 1.5k
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2
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9.7k
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Comment: C: STAR Killing Run When Trying To Build An Annotated Reference Genome
8.8 years ago by tiago211287 ★ 1.5k
1
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1
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9.7k
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Comment: C: STAR Killing Run When Trying To Build An Annotated Reference Genome
8.8 years ago by tiago211287 ★ 1.5k
1
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1
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4.0k
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Comment: C: GTF format that's acceptable for Tophat/Cufflinks
8.8 years ago by tiago211287 ★ 1.5k
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0
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2.1k
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Comment: C: Trinity Assembly Timing Question
8.8 years ago by tiago211287 ★ 1.5k
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51k
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Comment: C: Fastq Splitter For Paired End Reads
8.9 years ago by tiago211287 ★ 1.5k
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0
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2.6k
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Comment: C: How can I make all tracks on genome browser always scale relative to each other?
9.0 years ago by tiago211287 ★ 1.5k
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1
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5.9k
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Comment: C: How can I know what genes each Trinity ID are ?
9.2 years ago by tiago211287 ★ 1.5k
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1
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5.9k
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Comment: C: How can I know what genes each Trinity ID are ?
9.2 years ago by tiago211287 ★ 1.5k
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1
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2.1k
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Comment: C: Dataset normalization before gene ontology analysis
9.4 years ago by tiago211287 ★ 1.5k
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2
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4.5k
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Comment: C: RNA Normalization from DESeq to RPKM
9.4 years ago by tiago211287 ★ 1.5k
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0
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4.0k
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Comment: C: What can STAR-Fusion do ?
9.5 years ago by tiago211287 ★ 1.5k
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1
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14k
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Comment: C: Counting number of genes using htseq-count tool.
9.5 years ago by tiago211287 ★ 1.5k
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1
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4.0k
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Comment: C: What can STAR-Fusion do ?
9.5 years ago by tiago211287 ★ 1.5k
0
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1
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14k
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Comment: Comment: Counting number of genes using htseq-count tool.
updated 2.5 years ago by 45k • written 9.5 years ago by ★ 1.5k
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1.3k
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Comment: C: RNAseq guidelines reference
9.5 years ago by tiago211287 ★ 1.5k
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0
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3.7k
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Comment: Comment: DeSeq2 data transformation for visualization
updated 2.5 years ago by 45k • written 9.5 years ago by ★ 1.5k
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1
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2.7k
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Comment: C: Publications with poor sequencing data
9.5 years ago by tiago211287 ★ 1.5k
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1
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2.7k
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Comment: Comment: Publications with poor sequencing data
updated 2.5 years ago by 45k • written 9.5 years ago by ★ 1.5k
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1
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5.5k
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Comment: Comment: What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguou
updated 2.5 years ago by 45k • written 9.5 years ago by ★ 1.5k
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2.2k
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Comment: C: having up-regulated and down-regulated isoforms in Trinity output
9.5 years ago by tiago211287 ★ 1.5k
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0
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4.0k
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Comment: Comment: How to get the full gene name for a gene abbreviation list?
updated 2.5 years ago by 45k • written 9.6 years ago by ★ 1.5k
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1
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2.0k
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Comment: C: Exome-seq: many reads with mate pair mapping to different chromosome
9.6 years ago by tiago211287 ★ 1.5k
1
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0
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29k
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Comment: C: ggplot2 graphs are empty
9.6 years ago by tiago211287 ★ 1.5k
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1
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4.4k
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Comment: Comment: DEseq with 3 replicates and two conditions
updated 2.5 years ago by 45k • written 9.6 years ago by ★ 1.5k
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1
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3.5k
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Comment: Comment: Low final mapping rate by TopHat in spite of high initial Bowtie mapping
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
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0
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7.8k
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Comment: C: Informatics of RNA-Seq.
9.6 years ago by tiago211287 ★ 1.5k
1
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0
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3.6k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.6 years ago by tiago211287 ★ 1.5k
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0
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1.9k
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Comment: Comment: Recent RNA-Seq Analysis reviews
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
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0
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9.2k
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Comment: C: Merging bed files
9.6 years ago by tiago211287 ★ 1.5k
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0
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2.0k
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Comment: Comment: Same alignment but with different output on tophat2, any ideas?
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
0
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1
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3.6k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.6 years ago by tiago211287 ★ 1.5k
0
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2
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3.6k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.6 years ago by tiago211287 ★ 1.5k
0
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0
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3.6k
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Comment: Comment: What does it mean that: 100% of my alignment are discordant?
updated 3.1 years ago by 45k • written 9.6 years ago by ★ 1.5k
0
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1
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2.0k
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Comment: C: Same alignment but with different output on tophat2, any ideas?
9.6 years ago by tiago211287 ★ 1.5k
0
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1
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2.0k
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Comment: Comment: Same alignment but with different output on tophat2, any ideas?
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
0
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1
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3.7k
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Comment: Comment: Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
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2
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3.7k
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Comment: Comment: Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
0
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1
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4.4k
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Comment: Comment: SSPACE file error
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
0
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0
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2.0k
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Comment: C: Same alignment but with different output on tophat2, any ideas?
9.6 years ago by tiago211287 ★ 1.5k
0
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1
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3.7k
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Comment: Comment: How can I download GTF files from Biomart?
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
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0
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3.7k
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Comment: Comment: Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
updated 2.4 years ago by 45k • written 9.6 years ago by ★ 1.5k
0
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1
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2.6k
views
Comment: C: Can Tophat2 Align a Book?
9.6 years ago by tiago211287 ★ 1.5k
131 results • Page 2 of 3
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