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4
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1
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2.0k
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Comment: C: Does DESeq2 and EdgeR account for the increased total RNA production in one of t
4.5 years ago by Gordon Smyth ★ 8.3k
2
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0
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2.0k
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Answer: A: Does DESeq2 and EdgeR account for the increased total RNA production in one of t
4.5 years ago by Gordon Smyth ★ 8.3k
0
votes
0
replies
7.1k
views
Comment: C: Heatmap from EdgeR results
4.5 years ago by Gordon Smyth ★ 8.3k
0
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0
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7.1k
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Answer: A: Error in reading MatrixMarket file format using Seurat Read10X
4.5 years ago by Gordon Smyth ★ 8.3k
0
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1
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7.1k
views
Answer: A: Heatmap from EdgeR results
4.5 years ago by Gordon Smyth ★ 8.3k
4
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1
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6.8k
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Answer: A: Limma package, how to correct by age and sex?
4.5 years ago by Gordon Smyth ★ 8.3k
0
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0
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882
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Answer: A: error in processing Agilent two channel microarray raw data
4.6 years ago by Gordon Smyth ★ 8.3k
1
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0
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1.7k
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Comment: C: Exprimental design for DESeq2 or edger
4.6 years ago by Gordon Smyth ★ 8.3k
1
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1
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7.3k
views
Comment: C: A question regarding log2 transformation in EdgeR
4.6 years ago by Gordon Smyth ★ 8.3k
1
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0
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4.5k
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Answer: A: GSEA pvalue output of 0.0. Can I make it more specific?
4.6 years ago by Gordon Smyth ★ 8.3k
8
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1
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7.3k
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Answer: A: A question regarding log2 transformation in EdgeR
4.6 years ago by Gordon Smyth ★ 8.3k
1
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1
reply
2.0k
views
Comment: C: Limma: how to get the overall logFC from a linear model without contrast?
4.6 years ago by Gordon Smyth ★ 8.3k
2
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1
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2.0k
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Answer: A: Limma: how to get the overall logFC from a linear model without contrast?
4.6 years ago by Gordon Smyth ★ 8.3k
0
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0
replies
1.2k
views
Comment: C: limma analysis when only Cy5 was used
4.6 years ago by Gordon Smyth ★ 8.3k
3
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1
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1.0k
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Answer: A: Large sample size in edger
4.6 years ago by Gordon Smyth ★ 8.3k
2
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0
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765
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Answer: A: Using age as interger in model.matrix gives me an error
4.6 years ago by Gordon Smyth ★ 8.3k
0
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0
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4.7k
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Answer: Answer: limma goana or kegg
updated 3.1 years ago by 45k • written 4.6 years ago by ★ 8.3k
0
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0
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3.1k
views
Answer: A: GO annotation goana
4.6 years ago by Gordon Smyth ★ 8.3k
1
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0
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2.2k
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Comment: C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
4.6 years ago by Gordon Smyth ★ 8.3k
0
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0
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1.3k
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Comment: C: How to get gene level of differential expression from 2 color channel array with
4.6 years ago by Gordon Smyth ★ 8.3k
2
votes
1
reply
2.2k
views
Comment: C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
4.6 years ago by Gordon Smyth ★ 8.3k
0
votes
1
reply
1.3k
views
Comment: C: How to get gene level of differential expression from 2 color channel array with
4.6 years ago by Gordon Smyth ★ 8.3k
2
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1
reply
2.2k
views
Answer: A: How to extract genes from goana
4.7 years ago by Gordon Smyth ★ 8.3k
1
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1
reply
1.3k
views
Answer: A: How to get gene level of differential expression from 2 color channel array with
4.7 years ago by Gordon Smyth ★ 8.3k
1
vote
1
reply
6.2k
views
Answer: A: Microarray analysis in limma
4.7 years ago by Gordon Smyth ★ 8.3k
5
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1
reply
2.1k
views
Answer: A: How to analysis 2 color microarray data from GEO with limma?
4.7 years ago by Gordon Smyth ★ 8.3k
0
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0
replies
2.1k
views
Comment: C: How to analysis 2 color microarray data from GEO with limma?
4.7 years ago by Gordon Smyth ★ 8.3k
3
votes
0
replies
9.7k
views
Answer: A: Conversion of gene id to Refseq/gene symbol
4.8 years ago by Gordon Smyth ★ 8.3k
0
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1
reply
7.5k
views
Comment: C: Using ComBat-seq on transcript counts
4.8 years ago by Gordon Smyth ★ 8.3k
4
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1
reply
7.5k
views
Answer: Answer: Using ComBat-seq on transcript counts
3.1 years ago by Gordon Smyth ★ 8.3k
4
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0
replies
5.1k
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Answer: A: glmQLFTest coef for multiple comparisons
4.9 years ago by Gordon Smyth ★ 8.3k
0
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0
replies
2.7k
views
Comment: C: EdgeR exactTest help
4.9 years ago by Gordon Smyth ★ 8.3k
1
vote
1
reply
2.7k
views
Answer: A: EdgeR exactTest help
4.9 years ago by Gordon Smyth ★ 8.3k
1
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1
reply
2.0k
views
Answer: A: Statistically comparing two separate DEG lists
4.9 years ago by Gordon Smyth ★ 8.3k
0
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0
replies
3.6k
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Answer: A: Error in volcano plot drawing with R.
4.9 years ago by Gordon Smyth ★ 8.3k
1
vote
0
replies
3.3k
views
Comment: C: Tale as old as time: lmFit dimension issues
4.9 years ago by Gordon Smyth ★ 8.3k
3
votes
2
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3.3k
views
Answer: A: Tale as old as time: lmFit dimension issues
4.9 years ago by Gordon Smyth ★ 8.3k
3
votes
0
replies
3.8k
views
Answer: A: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
4.9 years ago by Gordon Smyth ★ 8.3k
0
votes
0
replies
3.2k
views
Comment: C: How is Log2FC calculated in a paired analysis
4.9 years ago by Gordon Smyth ★ 8.3k
0
votes
0
replies
9.4k
views
Comment: C: Why 'filterByExpr' does not eliminate low read counts from the expression data?
5.0 years ago by Gordon Smyth ★ 8.3k
1
vote
0
replies
3.6k
views
Comment: C: Random Variance T-Test In R?
5.0 years ago by Gordon Smyth ★ 8.3k
2
votes
0
replies
3.6k
views
Answer: A: Random Variance T-Test In R?
5.0 years ago by Gordon Smyth ★ 8.3k
2
votes
1
reply
1.1k
views
Answer: A: How to deal with Hi-C replicates from different patients' tissue sample?
5.0 years ago by Gordon Smyth ★ 8.3k
1
vote
0
replies
4.7k
views
Comment: C: RNAseq Variance calculation
5.1 years ago by Gordon Smyth ★ 8.3k
1
vote
0
replies
5.7k
views
Comment: C: Limma:Coefficients not estimable, please help
5.1 years ago by Gordon Smyth ★ 8.3k
0
votes
0
replies
2.1k
views
Answer: A: How to Normalize and log tranform the miRNA Seq data using DeSeQ2 / EdgeR?
5.1 years ago by Gordon Smyth ★ 8.3k
0
votes
1
reply
3.1k
views
Comment: C: DEG Analysis in R
5.1 years ago by Gordon Smyth ★ 8.3k
1
vote
0
replies
1.1k
views
Answer: A: error in decideTests(fit2)?
5.1 years ago by Gordon Smyth ★ 8.3k
0
votes
0
replies
6.2k
views
Comment: C: What this error means?Error in getEAWP(object) : data object isn't of a recogniz
5.1 years ago by Gordon Smyth ★ 8.3k
2
votes
1
reply
3.1k
views
Answer: A: DEG Analysis in R
5.1 years ago by Gordon Smyth ★ 8.3k
577 results • Page 9 of 12
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