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4
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1
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5.7k
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Answer: A: How can I make a BED file from a VCF file?
3.4 years ago by Brice Sarver ★ 3.7k
1
vote
1
reply
680
views
Answer: A: How to detect different chromosomes from whole genome NGS reads of a fungi?
3.6 years ago by Brice Sarver ★ 3.7k
1
vote
0
replies
912
views
Answer: A: Cannot run HaplotypeCaller in GATK
3.6 years ago by Brice Sarver ★ 3.7k
1
vote
0
replies
1.9k
views
Comment: C: How to Detect Frameshifts in a Protein Alignment
3.6 years ago by Brice Sarver ★ 3.7k
2
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1
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1.9k
views
Answer: A: How to Detect Frameshifts in a Protein Alignment
3.6 years ago by Brice Sarver ★ 3.7k
0
votes
1
reply
940
views
Comment: C: Good quality control metrics to look out for when someone gives you BAMs
3.6 years ago by Brice Sarver ★ 3.7k
0
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0
replies
2.0k
views
Answer: A: Bioinformatics Server on AWS
3.6 years ago by Brice Sarver ★ 3.7k
0
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0
replies
1.6k
views
Comment: C: How can you update position field in a VCF?
3.6 years ago by Brice Sarver ★ 3.7k
0
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0
replies
1.3k
views
Comment: C: De novo assembly of paired end reads for small separate genes
3.6 years ago by Brice Sarver ★ 3.7k
0
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1
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1.3k
views
Answer: A: De novo assembly of paired end reads for small separate genes
3.6 years ago by Brice Sarver ★ 3.7k
0
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0
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719
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Comment: C: Merge VCF INFO tags
3.6 years ago by Brice Sarver ★ 3.7k
0
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0
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1.5k
views
Comment: C: merging vcf files with sample information
3.6 years ago by Brice Sarver ★ 3.7k
0
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1
reply
1.5k
views
Answer: A: merging vcf files
3.6 years ago by Brice Sarver ★ 3.7k
2
votes
1
reply
950
views
Answer: A: GFF file for soybean RNAseq analysis
3.6 years ago by Brice Sarver ★ 3.7k
3
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1
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1.5k
views
Answer: A: Remote blast of SRA database
3.6 years ago by Brice Sarver ★ 3.7k
0
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0
replies
5.1k
views
Comment: C: /bin/bash/ command not found
3.6 years ago by Brice Sarver ★ 3.7k
1
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0
replies
3.1k
views
Answer: A: Is there any tool available to generate ultrametric tree from a rooted phylogene
3.6 years ago by Brice Sarver ★ 3.7k
0
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1
reply
5.1k
views
Comment: C: /bin/bash/ command not found
3.6 years ago by Brice Sarver ★ 3.7k
2
votes
0
replies
568
views
Answer: A: How to Read Alleles in Samtools
3.6 years ago by Brice Sarver ★ 3.7k
1
vote
1
reply
1.3k
views
Comment: C: PhD Bioinformatics on GWAS
3.6 years ago by Brice Sarver ★ 3.7k
0
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1
reply
1.7k
views
Comment: C: MODEL AVERAGING AND PHYLOGENETICS
updated 3.7 years ago by 40k • written 7.6 years ago by ★ 3.7k
0
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1
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1.8k
views
Answer: A: Genomes on chromosome level
updated 3.7 years ago by 40k • written 7.7 years ago by ★ 3.7k
1
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1
reply
4.6k
views
Comment: C: alignment rate in bowtie2
updated 3.7 years ago by 40k • written 7.7 years ago by ★ 3.7k
2
votes
1
reply
6.0k
views
Answer: A: mapping rate from sam format
updated 3.7 years ago by 40k • written 7.7 years ago by ★ 3.7k
2
votes
0
replies
936
views
Answer: A: How to assign keys and values in a directory by using python
3.7 years ago by Brice Sarver ★ 3.7k
0
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1
reply
1.1k
views
Comment: C: P-value of expected/observed proportion
3.8 years ago by Brice Sarver ★ 3.7k
3
votes
2
replies
4.2k
views
Answer: A: Tree input for PAML ancestral state reconstruction
updated 3.8 years ago by 40k • written 7.7 years ago by ★ 3.7k
1
vote
1
reply
2.1k
views
Comment: C: Using the same reads to assemble mitochondria and chloroplast genomes
updated 3.8 years ago by 40k • written 7.7 years ago by ★ 3.7k
2
votes
2
replies
2.1k
views
Answer: A: Using the same reads to assemble mitochondria and chloroplast genomes
updated 3.8 years ago by 40k • written 7.7 years ago by ★ 3.7k
3
votes
1
reply
1.3k
views
Answer: A: Identify fixed differences between population in WGS data (VCF Format)
3.8 years ago by Brice Sarver ★ 3.7k
2
votes
1
reply
1.6k
views
Answer: A: Criteria for merging multiple VCF files
3.8 years ago by Brice Sarver ★ 3.7k
0
votes
0
replies
2.1k
views
Comment: C: Is there a way to convert a FASTQ file to FASTA file?
3.8 years ago by Brice Sarver ★ 3.7k
0
votes
1
reply
1.7k
views
Comment: C: Analysing BAM files
3.8 years ago by Brice Sarver ★ 3.7k
3
votes
0
replies
2.6k
views
Answer: A: Interesting things to do with 23andme data
3.8 years ago by Brice Sarver ★ 3.7k
0
votes
0
replies
8.7k
views
Answer: A: Applying hard filters for variants
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 3.7k
0
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1
reply
6.8k
views
Comment: C: How to Collapse Bedtools reciprocal overlap regions
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 3.7k
0
votes
0
replies
6.0k
views
Comment: C: Calculate Fis (inbreeding coefficient)
3.8 years ago by Brice Sarver ★ 3.7k
1
vote
0
replies
728
views
Comment: C: How to create phylogenetic tree representing the DAPC clusters?
3.8 years ago by Brice Sarver ★ 3.7k
0
votes
0
replies
2.4k
views
Answer: A: adegent for Tajima's D:
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 3.7k
0
votes
0
replies
2.0k
views
Answer: A: Split a concatenated MSA and parse out taxa with only missing data
updated 3.8 years ago by 40k • written 8.0 years ago by ★ 3.7k
0
votes
0
replies
2.9k
views
Answer: A: How to write pairwiseAlignment in R in Fasta Format with Headers?
updated 3.9 years ago by 40k • written 8.1 years ago by ★ 3.7k
1
vote
0
replies
1.3k
views
Comment: C: calculating confidence intervals of boostrapped trees
3.9 years ago by Brice Sarver ★ 3.7k
1
vote
0
replies
2.9k
views
Answer: A: Split an interleaved nexus file into different gene alignments - Python
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 3.7k
0
votes
1
reply
4.2k
views
Answer: A: .gstmp extension on .bam files downloaded from google bucket; and EOF marker is
3.9 years ago by Brice Sarver ★ 3.7k
0
votes
0
replies
539
views
Comment: C: What might be the cause of database inconsistency
3.9 years ago by Brice Sarver ★ 3.7k
0
votes
0
replies
702
views
Answer: A: New Column based on another data frame
3.9 years ago by Brice Sarver ★ 3.7k
0
votes
0
replies
895
views
Comment: C: What tool displays DNA to protein translation alignments in a text-style visuali
3.9 years ago by Brice Sarver ★ 3.7k
2
votes
2
replies
895
views
Answer: A: What tool displays DNA to protein translation alignments in a text-style visuali
3.9 years ago by Brice Sarver ★ 3.7k
0
votes
0
replies
1.2k
views
Comment: C: Base count NOT read count - Downsampling to specific number of bases not reads?
3.9 years ago by Brice Sarver ★ 3.7k
0
votes
1
reply
1.2k
views
Comment: C: Base count NOT read count - Downsampling to specific number of bases not reads?
3.9 years ago by Brice Sarver ★ 3.7k
380 results • Page 1 of 8
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