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Showing :
answers
4
votes
1
reply
6.8k
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Answer:
A: How can I make a BED file from a VCF file?
4.0 years ago by
Brice Sarver
★ 3.8k
1
vote
1
reply
805
views
Answer:
A: How to detect different chromosomes from whole genome NGS reads of a fungi?
4.2 years ago by
Brice Sarver
★ 3.8k
1
vote
0
replies
1.0k
views
Answer:
A: Cannot run HaplotypeCaller in GATK
4.2 years ago by
Brice Sarver
★ 3.8k
2
votes
1
reply
2.5k
views
Answer:
A: How to Detect Frameshifts in a Protein Alignment
4.2 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
2.3k
views
Answer:
A: Bioinformatics Server on AWS
4.2 years ago by
Brice Sarver
★ 3.8k
0
votes
1
reply
1.4k
views
Answer:
A: De novo assembly of paired end reads for small separate genes
4.2 years ago by
Brice Sarver
★ 3.8k
0
votes
1
reply
1.7k
views
Answer:
A: merging vcf files
4.2 years ago by
Brice Sarver
★ 3.8k
2
votes
1
reply
1.1k
views
Answer:
A: GFF file for soybean RNAseq analysis
4.2 years ago by
Brice Sarver
★ 3.8k
3
votes
1
reply
1.6k
views
Answer:
A: Remote blast of SRA database
4.2 years ago by
Brice Sarver
★ 3.8k
1
vote
0
replies
3.4k
views
Answer:
A: Is there any tool available to generate ultrametric tree from a rooted phylogene
4.2 years ago by
Brice Sarver
★ 3.8k
2
votes
0
replies
666
views
Answer:
A: How to Read Alleles in Samtools
4.2 years ago by
Brice Sarver
★ 3.8k
0
votes
1
reply
2.1k
views
Answer:
A: Genomes on chromosome level
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
Brice Sarver
★ 3.8k
2
votes
1
reply
6.3k
views
Answer:
A: mapping rate from sam format
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
Brice Sarver
★ 3.8k
2
votes
0
replies
1.2k
views
Answer:
A: How to assign keys and values in a directory by using python
4.3 years ago by
Brice Sarver
★ 3.8k
3
votes
2
replies
4.5k
views
Answer:
A: Tree input for PAML ancestral state reconstruction
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
Brice Sarver
★ 3.8k
2
votes
2
replies
2.3k
views
Answer:
A: Using the same reads to assemble mitochondria and chloroplast genomes
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
Brice Sarver
★ 3.8k
3
votes
1
reply
1.5k
views
Answer:
A: Identify fixed differences between population in WGS data (VCF Format)
4.4 years ago by
Brice Sarver
★ 3.8k
2
votes
1
reply
1.9k
views
Answer:
A: Criteria for merging multiple VCF files
4.4 years ago by
Brice Sarver
★ 3.8k
3
votes
0
replies
2.9k
views
Answer:
A: Interesting things to do with 23andme data
4.4 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
9.4k
views
Answer:
A: Applying hard filters for variants
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
2.6k
views
Answer:
A: adegent for Tajima's D:
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
2.1k
views
Answer:
A: Split a concatenated MSA and parse out taxa with only missing data
updated 4.4 years ago by
Ram
43k • written 8.6 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
3.0k
views
Answer:
A: How to write pairwiseAlignment in R in Fasta Format with Headers?
updated 4.5 years ago by
Ram
43k • written 8.7 years ago by
Brice Sarver
★ 3.8k
1
vote
0
replies
3.1k
views
Answer:
A: Split an interleaved nexus file into different gene alignments - Python
updated 4.5 years ago by
Ram
43k • written 8.8 years ago by
Brice Sarver
★ 3.8k
1
vote
1
reply
4.6k
views
Answer:
A: .gstmp extension on .bam files downloaded from google bucket; and EOF marker is
4.5 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
820
views
Answer:
A: New Column based on another data frame
4.5 years ago by
Brice Sarver
★ 3.8k
2
votes
2
replies
1.1k
views
Answer:
A: What tool displays DNA to protein translation alignments in a text-style visuali
4.5 years ago by
Brice Sarver
★ 3.8k
2
votes
0
replies
11k
views
Answer:
A: padj in DEseq2
4.5 years ago by
Brice Sarver
★ 3.8k
3
votes
1
reply
1.6k
views
Answer:
A: Need help with codeml
4.5 years ago by
Brice Sarver
★ 3.8k
1
vote
1
reply
1.1k
views
Answer:
A: coverage of narrow peaks on genomic region using bedtools
4.5 years ago by
Brice Sarver
★ 3.8k
3
votes
1
reply
5.6k
views
Answer:
A: Remove or mask repeat regions from .fasta file
updated 4.5 years ago by
Ram
43k • written 8.9 years ago by
Brice Sarver
★ 3.8k
3
votes
0
replies
942
views
Answer:
A: Do you recommend any platform that I can use instead of an HPC?
4.5 years ago by
Brice Sarver
★ 3.8k
2
votes
2
replies
1.6k
views
Answer:
A: Are reads with the same length and position always "duplicates"
4.5 years ago by
Brice Sarver
★ 3.8k
3
votes
1
reply
1.2k
views
Answer:
A: generating 'maximal' cds sequence from multiple isoforms of a gene
4.5 years ago by
Brice Sarver
★ 3.8k
3
votes
0
replies
2.0k
views
Answer:
Answer: split supermatrix by gene
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Brice Sarver
★ 3.8k
1
vote
1
reply
1.7k
views
Answer:
A: Annotating dbnsfp by SnpSift on a cluster
4.5 years ago by
Brice Sarver
★ 3.8k
5
votes
0
replies
963
views
Answer:
A: Purpose of concatenation
4.6 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
1.1k
views
Answer:
A: Determine level of heterozygosity
4.6 years ago by
Brice Sarver
★ 3.8k
1
vote
1
reply
13k
views
Answer:
A: samtools index error
4.6 years ago by
Brice Sarver
★ 3.8k
0
votes
1
reply
1.0k
views
Answer:
A: Combine several VCF files
4.6 years ago by
Brice Sarver
★ 3.8k
4
votes
1
reply
1.4k
views
Answer:
A: Multiple test correction in Hyphy Analysis ?
4.6 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
1.1k
views
Answer:
A: How to download large amount of data from NCBI?
4.6 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
2.8k
views
Answer:
A: Import VCF from GnomAD
4.6 years ago by
Brice Sarver
★ 3.8k
2
votes
1
reply
1.8k
views
Answer:
A: Building gene trees
4.6 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
654
views
Answer:
A: identify disease related variants with RNA-seq
4.6 years ago by
Brice Sarver
★ 3.8k
1
vote
0
replies
692
views
Answer:
A: Pipeline for familial sequencing
4.6 years ago by
Brice Sarver
★ 3.8k
2
votes
0
replies
2.5k
views
Answer:
A: Drop tip from multiPhylo object in R
4.6 years ago by
Brice Sarver
★ 3.8k
1
vote
0
replies
3.5k
views
Answer:
A: CrossMap VCF liftover (GRCh37 > GRCh38): END info field for indel calls not lift
4.7 years ago by
Brice Sarver
★ 3.8k
0
votes
0
replies
1.1k
views
Answer:
A: Bootstrap values in Gubbins final tree
4.7 years ago by
Brice Sarver
★ 3.8k
1
vote
2
replies
24k
views
Answer:
A: ModuleNotFoundError: No module named 'Bio'
4.7 years ago by
Brice Sarver
★ 3.8k
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