Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
1
reply
2.3k
views
Answer: A: Generate artificial reads
7.7 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
4.1k
views
Comment: C: edgeR Pvalue/FDR results
7.8 years ago by James Ashmore ★ 3.5k
7
votes
2
replies
3.7k
views
Set maximum insert size with BWA MEM?
bwa bowtie2 atac-seq
updated 7.8 years ago by 103k • written 7.8 years ago by ★ 3.5k
0
votes
2
replies
4.4k
views
Generate ROC curve for RNA-seq/qRT-PCR data
roc RNA-Seq R
updated 7.9 years ago by 20 • written 8.0 years ago by ★ 3.5k
0
votes
0
replies
6.1k
views
Comment: C: Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
7.9 years ago by James Ashmore ★ 3.5k
0
votes
0
replies
4.3k
views
Comment: C: Build Bowtie2 2.3.3.1 with make on linux 64 bit
7.9 years ago by James Ashmore ★ 3.5k
1
vote
1
reply
3.8k
views
Comment: C: Whether to use all aligned reads (QC-passed) or only properly-paired reads from
7.9 years ago by James Ashmore ★ 3.5k
0
votes
9
replies
3.9k
views
Creating pseudo-replicates from a paired-end BAM file
bam pseudo-replicates
updated 7.9 years ago by 103k • written 7.9 years ago by ★ 3.5k
0
votes
0
replies
2.5k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
8.0 years ago by James Ashmore ★ 3.5k
0
votes
0
replies
2.5k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
8.0 years ago by James Ashmore ★ 3.5k
3
votes
0
replies
2.1k
views
Comment: C: RNAseq uneven PCR bias "how to take into best take into account uneven PCR bias
8.0 years ago by James Ashmore ★ 3.5k
1
vote
2
replies
2.5k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
2.5k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
2.3k
views
Comment: C: Post alignment using RseQC
8.0 years ago by James Ashmore ★ 3.5k
0
votes
0
replies
7.2k
views
Comment: C: Subset XStringSet by Sequence Name
8.0 years ago by James Ashmore ★ 3.5k
1
vote
2
replies
2.3k
views
Comment: C: Post alignment using RseQC
8.0 years ago by James Ashmore ★ 3.5k
1
vote
1
reply
7.2k
views
Answer: A: Subset XStringSet by Sequence Name
8.0 years ago by James Ashmore ★ 3.5k
1
vote
1
reply
3.8k
views
Answer: A: Use UNIX reverse complement
8.0 years ago by James Ashmore ★ 3.5k
1
vote
0
replies
2.4k
views
Answer: A: Conditional modification of counts in the DESeq Data Set
8.0 years ago by James Ashmore ★ 3.5k
0
votes
2
replies
2.5k
views
Compromise null hypothesis when calling differential binding between ChIP-seq conditions
ChIP-Seq DiffBind csaw
updated 8.0 years ago by 20 • written 9.1 years ago by ★ 3.5k
0
votes
0
replies
6.7k
views
Comment: C: What does Picard tools cleansam and fixemate exactly do and what are the equival
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
3.5k
views
Answer: A: How to delete everything after a certain point in GFF3 file - PYTHON
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
4.6k
views
Comment: C: Best way to compare expression values between two groups
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
10k
views
Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
4.6k
views
Comment: C: Best way to compare expression values between two groups
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
4.6k
views
Comment: C: Best way to compare expression values between two groups
8.0 years ago by James Ashmore ★ 3.5k
1
vote
0
replies
5.2k
views
Comment: C: End coordinate bigger than chromosome size converting bedgraph to bigwig/ Setti
8.0 years ago by James Ashmore ★ 3.5k
0
votes
0
replies
5.2k
views
Comment: C: Data retrieval from GEO
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
3.7k
views
Comment: C: About bedtools closest command line output understanding
8.0 years ago by James Ashmore ★ 3.5k
1
vote
1
reply
5.2k
views
Answer: A: Data retrieval from GEO
8.0 years ago by James Ashmore ★ 3.5k
0
votes
0
replies
29k
views
Comment: C: TMM normalization factors in RNA-seq analysis
8.0 years ago by James Ashmore ★ 3.5k
0
votes
0
replies
2.7k
views
Comment: C: bowtie2 summary looks very weird. Neither concordant nor discordant.
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
2.7k
views
Comment: C: bowtie2 summary looks very weird. Neither concordant nor discordant.
8.0 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
4.4k
views
Automate requests to Primer-BLAST
requests primer python
updated 4.1 years ago by • 0 • written 8.1 years ago by ★ 3.5k
0
votes
1
reply
11k
views
Comment: C: Truncated sam file - Parse error
8.1 years ago by James Ashmore ★ 3.5k
0
votes
0
replies
2.3k
views
Comment: C: Merging bed intervals within a group
8.1 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
2.3k
views
Comment: C: Merging bed intervals within a group
8.1 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
3.8k
views
Comment: C: extract the aligned read names and their reference fasta sequence name
8.1 years ago by James Ashmore ★ 3.5k
1
vote
1
reply
3.5k
views
Comment: C: BETA for RNA-Seq and ChIP-Seq Data Integration
8.1 years ago by James Ashmore ★ 3.5k
2
votes
0
replies
13k
views
Comment: C: Retrieving data from NCBI GEO and RNA-Seq Data Analysis
8.1 years ago by James Ashmore ★ 3.5k
1
vote
0
replies
4.1k
views
Comment: C: How to merge bedGraph records which are next to each other and have the same sco
8.1 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
4.1k
views
Comment: C: How to merge bedGraph records which are next to each other and have the same sco
8.1 years ago by James Ashmore ★ 3.5k
6
votes
6
replies
4.1k
views
How to merge bedGraph records which are next to each other and have the same score?
bedGraph
updated 8.1 years ago by 12k • written 8.1 years ago by ★ 3.5k
1
vote
2
replies
4.1k
views
Answer: A: FastQC's report -- 'Per base sequence content' heading odd wave
8.1 years ago by James Ashmore ★ 3.5k
2
votes
0
replies
2.4k
views
Answer: A: Design qpcr primers
8.1 years ago by James Ashmore ★ 3.5k
2
votes
1
reply
2.0k
views
Comment: C: Trimming adapters with custom scoring
8.1 years ago by James Ashmore ★ 3.5k
9
votes
0
replies
16k
views
Answer: A: What "chrUn" stand for in UCSC genome browser web server?
8.1 years ago by James Ashmore ★ 3.5k
0
votes
1
reply
2.1k
views
Creating reproducible peak regions from multiple ChIP-seq studies
bedtools bedops
updated 8.1 years ago by 20 • written 8.3 years ago by ★ 3.5k
2
votes
0
replies
4.3k
views
Answer: A: find genes name of a specific location
8.1 years ago by James Ashmore ★ 3.5k
4
votes
0
replies
4.5k
views
Answer: A: How to extend bed intervals to a uniform size?
8.1 years ago by James Ashmore ★ 3.5k
290 results • Page 2 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6