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Showing :
answers
2
votes
0
replies
3.1k
views
Answer:
A: How to join DESeq2 object "res" to the gene annotation with dplyr?
5.2 years ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
2.6k
views
Answer:
A: Difficulty in Host removal by Bowtie2,samtools and bedtools
5.2 years ago by
Antonio R. Franco
★ 5.1k
2
votes
1
reply
7.1k
views
Answer:
A: normalization with DEseq2
updated 5.3 years ago by
Ram
43k • written 8.6 years ago by
Antonio R. Franco
★ 5.1k
2
votes
0
replies
1.4k
views
Answer:
A: FastQ ColorSpace to BaseSpace format in 2018
5.5 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
1.1k
views
Answer:
A: weird number in log2FC
5.5 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
3.0k
views
Answer:
A: Installing samtools from sourceforge
5.6 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
2.2k
views
Answer:
A: Per base GC content with a shoulder after adapter removal and trimming
5.6 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
1.4k
views
Answer:
A: CpG Methylation data from PacBio sequencing
5.6 years ago by
Antonio R. Franco
★ 5.1k
2
votes
0
replies
2.3k
views
Answer:
A: design matrix for time point comparision [1 treatment] in time course RNA Seq -
5.6 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
1.4k
views
Answer:
A: How to use simultaneously long and short reads to assemble de novo a transcript
5.6 years ago by
Antonio R. Franco
★ 5.1k
3
votes
0
replies
1.5k
views
Answer:
A: Organizing tools/ software
5.6 years ago by
Antonio R. Franco
★ 5.1k
1
vote
2
replies
6.8k
views
Answer:
A: SE reads in fr-firststrand, fr-secondstrand
updated 5.6 years ago by
Ram
43k • written 8.2 years ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
1.3k
views
Answer:
A: sequence alignment of protein sequence
5.6 years ago by
Antonio R. Franco
★ 5.1k
2
votes
1
reply
10k
views
Answer:
A: Problem In running read.Table function in R
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
2.7k
views
Answer:
A: blast running for several splitted query
updated 5.7 years ago by
Ram
43k • written 9.0 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
24k
views
Answer:
A: Best trimming tool
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
2.4k
views
Answer:
A: Find patterns in DNA sequence
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
1.3k
views
Answer:
A: returning the gene name back to my matrix
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
1.3k
views
Answer:
A: returning the gene name back to my matrix
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Antonio R. Franco
★ 5.1k
2
votes
1
reply
1.3k
views
Answer:
A: returning the gene name back to my matrix
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
1.5k
views
Answer:
A: Exonic SNPs extraction
5.8 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
8.6k
views
Answer:
A: rRNA remove from RNAseq data
5.8 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
1.4k
views
Answer:
A: how can we create heat map for only upregulated gene list
5.9 years ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
3.1k
views
Answer:
A: Salmon choosing library type
5.9 years ago by
Antonio R. Franco
★ 5.1k
3
votes
1
reply
5.7k
views
Answer:
A: What are the best tools for visualizing DNA methylation result?
5.9 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
9.4k
views
Answer:
A: Gallery: Computational tools for DNA methylation
5.9 years ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
10k
views
Answer:
A: RPKM to TPM conversion?
5.9 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
4.2k
views
Answer:
A: Could somebody suggest free pathway visualization tool for omics data from plant
5.9 years ago by
Antonio R. Franco
★ 5.1k
2
votes
0
replies
3.4k
views
Answer:
A: The best way to produce gene body coverage
5.9 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
3.5k
views
Answer:
A: how can I get identical read1 and read2?
5.9 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
1.1k
views
Answer:
A: What is the exact number of gene that we can detect from differentially expresse
6.0 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
12k
views
Answer:
A: Interpreting distance from clustal omega
6.0 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
12k
views
Answer:
A: Interpreting distance from clustal omega
6.0 years ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
4.0k
views
Answer:
A: short RNA reads alignment
6.1 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
2.8k
views
Answer:
A: Remove singletons from bam
6.1 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
867
views
Answer:
A: Preparing primary assembly in RNAseq
6.1 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
1.5k
views
Answer:
A: Is it normal a substantial reduction of BAM files after ordering ?
6.2 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
5.5k
views
Answer:
A: Does STAR give the reads that were mapped at intergenic regions? How can I get t
6.4 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
1.9k
views
Answer:
A: finding contigs present in one assembly but missing from another
6.4 years ago by
Antonio R. Franco
★ 5.1k
0
votes
1
reply
1.4k
views
Answer:
A: Structure of a enzyme
6.4 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
1.9k
views
Answer:
A: Alignment of the partial genome sequencing
6.5 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
1.9k
views
Answer:
A: Alignment of the partial genome sequencing
6.5 years ago by
Antonio R. Franco
★ 5.1k
3
votes
1
reply
13k
views
Answer:
A: HISAT2 rna-strandness option
6.8 years ago by
Antonio R. Franco
★ 5.1k
13
votes
1
reply
13k
views
Answer:
A: HISAT2 rna-strandness option
6.8 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
13k
views
Answer:
A: Finding total number of reads from BAM file
7.1 years ago by
Antonio R. Franco
★ 5.1k
2
votes
0
replies
2.5k
views
Answer:
A: reference-guided genome assembly: stretches of Ns
7.1 years ago by
Antonio R. Franco
★ 5.1k
3
votes
0
replies
1.9k
views
Answer:
A: Raw expression data is better for FPKM normalised expression profile in RNA seq
7.1 years ago by
Antonio R. Franco
★ 5.1k
2
votes
0
replies
5.0k
views
Answer:
A: How to remove multiple fasta sequence from fasta file using gene id
7.1 years ago by
Antonio R. Franco
★ 5.1k
1
vote
1
reply
5.4k
views
Answer:
A: Write excel file formatted as Table in R
7.1 years ago by
Antonio R. Franco
★ 5.1k
2
votes
1
reply
2.4k
views
Answer:
A: Trinity RNASeq DNASeq assembly
7.3 years ago by
Antonio R. Franco
★ 5.1k
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