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3
votes
1
reply
3.8k
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Help understanding Deseq2 '~group' contrasts
RNA-Seq Deseq2 DE
updated 4.4 years ago by 20 • written 8.5 years ago by ▴ 380
2
votes
1
reply
50k
views
Answer: A: convert text file to VCF file ?
updated 5.5 years ago by 44k • written 9.7 years ago by ▴ 380
1
vote
3
replies
2.7k
views
Help with Mitelman Database
fusion database mitelman cancer
updated 5.8 years ago by • 0 • written 8.6 years ago by ▴ 380
0
votes
0
replies
2.8k
views
Answer: A: questions about DESeq2
updated 6.1 years ago by 44k • written 8.7 years ago by ▴ 380
1
vote
0
replies
8.9k
views
Comment: C: Gene ID mapping of Ensembl IDs
updated 6.1 years ago by 44k • written 8.7 years ago by ▴ 380
1
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1
reply
2.0k
views
Answer: A: Best approach to measure statistically significant difference between two region
updated 6.1 years ago by 44k • written 8.7 years ago by ▴ 380
12
votes
2
replies
25k
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Answer: A: Heatmap.2 R for differentially expressed genes DeSEQ2
updated 6.1 years ago by 44k • written 8.7 years ago by ▴ 380
4
votes
8
replies
2.0k
views
Genome Browsers with BAM viewing capabilitites - Debian
bam visulization
updated 8.4 years ago by 20 • written 8.5 years ago by ▴ 380
0
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0
replies
2.0k
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Comment: C: Genome Browsers with BAM viewing capabilitites - Debian
8.5 years ago by mbio.kyle ▴ 380
0
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1
reply
2.0k
views
Comment: C: Genome Browsers with BAM viewing capabilitites - Debian
8.5 years ago by mbio.kyle ▴ 380
1
vote
0
replies
2.0k
views
Answer: A: Genome Browsers with BAM viewing capabilitites - Debian
8.5 years ago by mbio.kyle ▴ 380
0
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0
replies
2.0k
views
Comment: C: Genome Browsers with BAM viewing capabilitites - Debian
8.5 years ago by mbio.kyle ▴ 380
0
votes
6
replies
5.7k
views
Tophat2 Reporting output tracks failed
alignment software-error tophat2 rna-seq
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 380
0
votes
1
reply
2.6k
views
Negative Zero Workaround in R for signed p-value sorting
R statistics
updated 8.6 years ago by ▴ 730 • written 8.6 years ago by ▴ 380
1
vote
0
replies
3.5k
views
GSEA Prerank: Having Phenotype labels
gsea RNA-Seq prerank
8.6 years ago by mbio.kyle ▴ 380
0
votes
0
replies
4.8k
views
Comment: C: How to build a custom reference genome (from a BED file)
8.6 years ago by mbio.kyle ▴ 380
2
votes
1
reply
4.8k
views
Answer: A: How to build a custom reference genome (from a BED file)
8.6 years ago by mbio.kyle ▴ 380
0
votes
0
replies
2.0k
views
Comment: C: Generating simulated gene expression data sample based on DESeq2 result
8.6 years ago by mbio.kyle ▴ 380
0
votes
0
replies
2.2k
views
Comment: C: How to read a DNA sequence for Motif analysis more efficiently?
8.6 years ago by mbio.kyle ▴ 380
0
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0
replies
2.7k
views
Comment: C: Help with Mitelman Database
8.6 years ago by mbio.kyle ▴ 380
2
votes
0
replies
1.8k
views
Answer: A: Can anyone suggest some good research papers to understand the complete NGS work
8.7 years ago by mbio.kyle ▴ 380
4
votes
1
reply
5.7k
views
Answer: A: What are some good resources to learn shell script for NGS pipeline development?
8.7 years ago by mbio.kyle ▴ 380
3
votes
2
replies
3.2k
views
Using io.StringIO() with biopython Phylo parse
python biopython phylogenetics tree newick
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 380
7
votes
8
replies
3.0k
views
Discrepency between number of reads tophat
RNA-Seq tophat software-error
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 380
0
votes
0
replies
2.0k
views
Comment: C: 1st metagenomic experiment
9.2 years ago by mbio.kyle ▴ 380
1
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1
reply
3.0k
views
Comment: Comment: Discrepency between number of reads tophat
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 380
0
votes
1
reply
3.0k
views
Comment: Comment: Discrepency between number of reads tophat
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 380
0
votes
2
replies
3.0k
views
Comment: C: Discrepency between number of reads tophat
9.2 years ago by mbio.kyle ▴ 380
1
vote
0
replies
3.0k
views
Comment: C: Discrepency between number of reads tophat
9.2 years ago by mbio.kyle ▴ 380
2
votes
1
reply
2.7k
views
Comment: C: Tophat - poor mapping in control vs treament
9.2 years ago by mbio.kyle ▴ 380
0
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1
reply
2.7k
views
Comment: C: Tophat - poor mapping in control vs treament
9.2 years ago by mbio.kyle ▴ 380
0
votes
1
reply
4.2k
views
Answer: Answer: tophat installation problem
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 380
1
vote
0
replies
2.2k
views
Comment: C: Motifs position from TSS
9.2 years ago by mbio.kyle ▴ 380
0
votes
0
replies
4.0k
views
Comment: Comment: Using Ensembl API to get a Gene ID from a protein ID
updated 2.0 years ago by 44k • written 9.3 years ago by ▴ 380
0
votes
1
reply
1.6k
views
Comment: Comment: Strange pattern in cufflink output
updated 22 months ago by 44k • written 9.3 years ago by ▴ 380
0
votes
0
replies
4.5k
views
Comment: Comment: UCSC BedGraph Issue
updated 22 months ago by 44k • written 9.3 years ago by ▴ 380
6
votes
10
replies
4.5k
views
UCSC BedGraph Issue
bedgraph kent ucsc methylation
updated 22 months ago by 44k • written 9.3 years ago by ▴ 380
0
votes
2
replies
4.5k
views
Comment: Comment: UCSC BedGraph Issue
updated 22 months ago by 44k • written 9.3 years ago by ▴ 380
0
votes
0
replies
4.5k
views
Comment: Comment: UCSC BedGraph Issue
updated 22 months ago by 44k • written 9.3 years ago by ▴ 380
0
votes
2
replies
4.5k
views
Comment: C: UCSC BedGraph Issue
9.3 years ago by mbio.kyle ▴ 380
0
votes
0
replies
1.9k
views
Answer: A: Strange behaviour of chip seq experiment
9.3 years ago by mbio.kyle ▴ 380
0
votes
0
replies
5.5k
views
Comment: C: Cuffdiff: 0 expression and NOTEST
9.4 years ago by mbio.kyle ▴ 380
0
votes
1
reply
5.5k
views
Answer: Answer: Cuffdiff: 0 expression and NOTEST
updated 22 months ago by 44k • written 9.4 years ago by ▴ 380
3
votes
4
replies
5.5k
views
Cuffdiff: 0 expression and NOTEST
RNA-Seq cuffdiff
updated 22 months ago by 44k • written 9.4 years ago by ▴ 380
0
votes
0
replies
2.5k
views
Comment: Comment: MEDIPS Crashing: "Error in 1:max_signal_index : argument of length 0"
updated 22 months ago by 44k • written 9.4 years ago by ▴ 380
0
votes
2
replies
2.5k
views
MEDIPS Crashing: "Error in 1:max_signal_index : argument of length 0"
R bioconductor software-error MEDIPS
updated 22 months ago by 44k • written 9.4 years ago by ▴ 380
0
votes
0
replies
2.7k
views
Comment: C: Search for a "standard" PWM for Kozak Sequence
9.5 years ago by mbio.kyle ▴ 380
0
votes
1
reply
2.7k
views
Comment: Comment: Search for a "standard" PWM for Kozak Sequence
updated 21 months ago by 44k • written 9.5 years ago by ▴ 380
1
vote
4
replies
2.7k
views
Search for a "standard" PWM for Kozak Sequence
genome motif kozak
updated 21 months ago by 44k • written 10.0 years ago by ▴ 380
0
votes
0
replies
3.5k
views
Comment: C: Clustering RNA Seq - No Conditions, No Replicates
9.6 years ago by mbio.kyle ▴ 380
54 results • Page 1 of 2
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