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Comment: Comment: Using and running the nf-core rnaseq pipeline on a server or cluster
4.0 years ago by Phil Ewels ★ 1.5k
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Comment: Comment: Using and running the nf-core rnaseq pipeline on a server or cluster
4.0 years ago by Phil Ewels ★ 1.5k
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5.1k
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Comment: Comment: Using and running the nf-core rnaseq pipeline on a server or cluster
4.0 years ago by Phil Ewels ★ 1.5k
2
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5.1k
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Answer: Answer: Using and running the nf-core rnaseq pipeline on a server or cluster
4.0 years ago by Phil Ewels ★ 1.5k
2
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3.1k
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Comment: Comment: How to pass custom software specific variables to nf-core/sarek nextflow pipelin
4.2 years ago by Phil Ewels ★ 1.5k
3
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1
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8.2k
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Answer: Answer: Looking for a tool which provides mapping quality score distributions from BAM f
4.2 years ago by Phil Ewels ★ 1.5k
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3.1k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
4.4 years ago by Phil Ewels ★ 1.5k
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1
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3.1k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
4.4 years ago by Phil Ewels ★ 1.5k
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3.9k
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Answer: Answer: Flagstats and multiqc
4.5 years ago by Phil Ewels ★ 1.5k
2
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1
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3.4k
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Answer: Answer: Missing some output files for MultiQC
4.5 years ago by Phil Ewels ★ 1.5k
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3.4k
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Comment: Comment: Missing some output files for MultiQC
4.5 years ago by Phil Ewels ★ 1.5k
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9.9k
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Answer: Answer: cannot import name 'gcd' from 'fractions'
4.5 years ago by Phil Ewels ★ 1.5k
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5.5k
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Answer: Answer: Multiqc raises the "cannot import name 'gcd' from 'fractions'" error
4.6 years ago by Phil Ewels ★ 1.5k
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5.5k
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Comment: Comment: Multiqc raises the "cannot import name 'gcd' from 'fractions'" error
4.6 years ago by Phil Ewels ★ 1.5k
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6.7k
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Comment: Comment: How to interpret multiqc report
4.6 years ago by Phil Ewels ★ 1.5k
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21k
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Comment: Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
4.6 years ago by Phil Ewels ★ 1.5k
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2
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21k
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Comment: Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
4.6 years ago by Phil Ewels ★ 1.5k
74
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28
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21k
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13 follow
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
fastq SRA
updated 5 weeks ago by • 0 • written 6.7 years ago by ★ 1.5k
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21k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
5.2 years ago by Phil Ewels ★ 1.5k
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0
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21k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
5.2 years ago by Phil Ewels ★ 1.5k
1
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1
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21k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
5.2 years ago by Phil Ewels ★ 1.5k
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2.7k
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Comment: C: MultiQC extra_fn_clean_exts for specific module
5.4 years ago by Phil Ewels ★ 1.5k
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0
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21k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
6.0 years ago by Phil Ewels ★ 1.5k
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1
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21k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
6.0 years ago by Phil Ewels ★ 1.5k
1
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0
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14k
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Answer: A: Installing MultiQC on Ubuntu
6.1 years ago by Phil Ewels ★ 1.5k
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0
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1.8k
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Answer: A: ask for a CWL script to perform FASTQC to get quality control files, then use th
6.1 years ago by Phil Ewels ★ 1.5k
1
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1
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21k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
6.7 years ago by Phil Ewels ★ 1.5k
3
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1
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2.7k
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Answer: A: MultiQC extra_fn_clean_exts for specific module
6.7 years ago by Phil Ewels ★ 1.5k
1
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0
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11k
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Answer: A: How do you use MultiQC on FastQC files taken from SRA files?
6.9 years ago by Phil Ewels ★ 1.5k
1
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0
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3.8k
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Answer: A: Difference in duplicate number with samtools flagstat and multiqc/fastqc
6.9 years ago by Phil Ewels ★ 1.5k
3
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6.5k
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Comment: C: How to extract mapping features of multiple samples in one output?
6.9 years ago by Phil Ewels ★ 1.5k
4
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1
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5.0k
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Answer: A: Converting FASTQC Reports to PDF
6.9 years ago by Phil Ewels ★ 1.5k
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2.6k
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Job: System developer at NGI Stockholm Sequencing Facility, SciLifeLab Sweden
automation developer sysadmin facility
updated 2.5 years ago by 45k • written 8.0 years ago by ★ 1.5k
0
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4.6k
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Comment: C: How to calculate the percent of methylated cytosines.
8.2 years ago by Phil Ewels ★ 1.5k
0
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1
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4.6k
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Comment: C: How to calculate the percent of methylated cytosines.
8.2 years ago by Phil Ewels ★ 1.5k
1
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2
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4.6k
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Answer: A: How to calculate the percent of methylated cytosines.
8.2 years ago by Phil Ewels ★ 1.5k
1
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0
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10k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
8.2 years ago by Phil Ewels ★ 1.5k
1
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1
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10k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
8.2 years ago by Phil Ewels ★ 1.5k
1
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0
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10k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
8.2 years ago by Phil Ewels ★ 1.5k
1
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1
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10k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
8.2 years ago by Phil Ewels ★ 1.5k
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2.5k
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Answer: A: Are all antisense transcripts from polyA enriched library RNA-seq polyadenylated
8.2 years ago by Phil Ewels ★ 1.5k
1
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0
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10k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
8.2 years ago by Phil Ewels ★ 1.5k
1
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2
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10k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
8.2 years ago by Phil Ewels ★ 1.5k
2
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1
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10k
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Answer: A: Too low mapping percentage using HISAT2 on human reference genome.
8.2 years ago by Phil Ewels ★ 1.5k
1
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0
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2.4k
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Answer: A: multiqc : sum up several _Log.final.out into one
8.2 years ago by Phil Ewels ★ 1.5k
0
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0
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3.7k
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Comment: C: Bismark on sample with 2 genomes
8.6 years ago by Phil Ewels ★ 1.5k
2
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0
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3.7k
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Answer: A: Bismark on sample with 2 genomes
8.6 years ago by Phil Ewels ★ 1.5k
0
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0
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8.2k
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Comment: C: Running multiQC on more than one file Log.final.out from STAR
8.9 years ago by Phil Ewels ★ 1.5k
2
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0
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8.2k
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Answer: A: Running multiQC on more than one file Log.final.out from STAR
8.9 years ago by Phil Ewels ★ 1.5k
1
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0
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20k
views
Answer: Answer: Workflow management software for pipeline development in NGS
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.5k
100 results • Page 2 of 2
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