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Aligning multiple paired-end samples tophat2 command line
RNA-Seq
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 510
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0
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3.6k
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Comment: A: Aligning multiple paired-end samples tophat2 command line
9.9 years ago by nash.claire ▴ 510
2
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4
replies
5.4k
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Generate hg19.fa file from hg19.bt2 index files - bowtie2-inspect???
RNA-Seq genome sequence
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 510
0
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2
replies
3.0k
views
Problem co-ordinate sorting BAM file with Galaxy
ChIP-Seq sequence alignment
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 510
2
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4
replies
3.3k
views
Can't load BED file in IGB
igb
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 510
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1
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3.3k
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Comment: Comment: Can't load BED file in IGB
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 510
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0
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7.4k
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Comment: Comment: bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.x
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 510
0
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1
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7.4k
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Comment: C: bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.x
10.1 years ago by nash.claire ▴ 510
0
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1
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7.4k
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Comment: C: bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.x
10.1 years ago by nash.claire ▴ 510
1
vote
6
replies
7.4k
views
bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.xls file
ChIP-Seq
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 510
0
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0
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3.0k
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Comment: Comment: mfold parameter in MACS on Galaxy/ Galaxy Cistrome
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 510
0
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2
replies
3.0k
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mfold parameter in MACS on Galaxy/ Galaxy Cistrome
ChIP-Seq
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 510
0
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0
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3.3k
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Comment: C: Is it necessary to normalize sequencing data BEFORE input into MACS for ChIP-seq
10.1 years ago by nash.claire ▴ 510
1
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2
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3.3k
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Is it necessary to normalize sequencing data BEFORE input into MACS for ChIP-seq??
ChIP-Seq
updated 3.3 years ago by 45k • written 10.1 years ago by ▴ 510
0
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0
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3.9k
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Comment: C: Quality metrics of ChIP-seq BAM files
10.1 years ago by nash.claire ▴ 510
2
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4
replies
3.9k
views
Quality metrics of ChIP-seq BAM files
ChIP-Seq
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 510
1
vote
1
reply
4.2k
views
Comment: Comment: Gene enrichment analysis with a simple gene list compared to microarray data
updated 3.6 years ago by 45k • written 10.7 years ago by ▴ 510
0
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0
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5.8k
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Comment: Comment: Best tool for finding transcription factor binding sites in a given genomic sequ
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 510
2
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2
replies
5.8k
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Best tool for finding transcription factor binding sites in a given genomic sequence
sequence gene
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 510
0
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0
replies
1.5k
views
Aligning old SAGE tag-sequencing data to the latest reference genome
sequencing alignment
updated 4.6 years ago by 45k • written 11.1 years ago by ▴ 510
0
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1
reply
3.0k
views
Comment: Comment: How to deal with zeros in tag-seq NGS analysis
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 510
1
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3
replies
3.0k
views
How to deal with zeros in tag-seq NGS analysis
RNA-Seq alignment next-gen
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 510
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