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Aligning multiple paired-end samples tophat2 command line
RNA-Seq
updated 21 months ago by 43k • written 8.4 years ago by ▴ 490
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0
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3.1k
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Comment: A: Aligning multiple paired-end samples tophat2 command line
8.4 years ago by nash.claire ▴ 490
2
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4
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4.6k
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Generate hg19.fa file from hg19.bt2 index files - bowtie2-inspect???
RNA-Seq genome sequence
updated 21 months ago by 43k • written 8.4 years ago by ▴ 490
0
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2
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2.6k
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Problem co-ordinate sorting BAM file with Galaxy
ChIP-Seq sequence alignment
updated 20 months ago by 43k • written 8.6 years ago by ▴ 490
2
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4
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2.6k
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Can't load BED file in IGB
igb
updated 20 months ago by 43k • written 8.6 years ago by ▴ 490
0
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1
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2.6k
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Comment: Comment: Can't load BED file in IGB
updated 20 months ago by 43k • written 8.6 years ago by ▴ 490
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0
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6.5k
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Comment: Comment: bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.x
updated 20 months ago by 43k • written 8.6 years ago by ▴ 490
0
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1
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6.5k
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Comment: C: bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.x
8.6 years ago by nash.claire ▴ 490
0
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1
reply
6.5k
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Comment: C: bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.x
8.6 years ago by nash.claire ▴ 490
1
vote
6
replies
6.5k
views
bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.xls file
ChIP-Seq
updated 20 months ago by 43k • written 8.6 years ago by ▴ 490
0
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0
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2.5k
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Comment: Comment: mfold parameter in MACS on Galaxy/ Galaxy Cistrome
updated 20 months ago by 43k • written 8.6 years ago by ▴ 490
0
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2
replies
2.5k
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mfold parameter in MACS on Galaxy/ Galaxy Cistrome
ChIP-Seq
updated 20 months ago by 43k • written 8.6 years ago by ▴ 490
0
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0
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2.9k
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Comment: C: Is it necessary to normalize sequencing data BEFORE input into MACS for ChIP-seq
8.6 years ago by nash.claire ▴ 490
1
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2
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2.9k
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Is it necessary to normalize sequencing data BEFORE input into MACS for ChIP-seq??
ChIP-Seq
updated 21 months ago by 43k • written 8.6 years ago by ▴ 490
0
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0
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3.3k
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Comment: C: Quality metrics of ChIP-seq BAM files
8.6 years ago by nash.claire ▴ 490
2
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4
replies
3.3k
views
Quality metrics of ChIP-seq BAM files
ChIP-Seq
updated 19 months ago by 43k • written 8.7 years ago by ▴ 490
1
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1
reply
3.5k
views
Comment: Comment: Gene enrichment analysis with a simple gene list compared to microarray data
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 490
0
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0
replies
5.1k
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Comment: Comment: Best tool for finding transcription factor binding sites in a given genomic sequ
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 490
2
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2
replies
5.1k
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Best tool for finding transcription factor binding sites in a given genomic sequence
sequence gene
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 490
0
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0
replies
1.4k
views
Aligning old SAGE tag-sequencing data to the latest reference genome
sequencing alignment
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 490
0
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1
reply
2.5k
views
Comment: Comment: How to deal with zeros in tag-seq NGS analysis
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 490
1
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3
replies
2.5k
views
How to deal with zeros in tag-seq NGS analysis
RNA-Seq alignment next-gen
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 490
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