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Comment: C: how to extract best hits of blast in terms of e-value, identity,...?
10.4 years ago by seta ★ 1.9k
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1
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19k
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Comment: Comment: how to extract best hits of blast in terms of e-value, identity,...?
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 1.9k
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Comment: Comment: How to compute the number of unique proteins hit found in the blastx search
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
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1
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2.2k
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Comment: Comment: How to compute the number of unique proteins hit found in the blastx search
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
1
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5
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2.2k
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How to compute the number of unique proteins hit found in the blastx search
blast RNA-Seq alignment
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
0
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3
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3.2k
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Script to assess the transcriptome assembly quality in terms of blastx and tblasn results?
Assembly blast RNA-Seq sequencing
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
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0
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2.8k
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Comment: C: How to divide lots of nucleotide sequences into complete cds and partial in a gi
10.5 years ago by seta ★ 1.9k
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4
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2.8k
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How to divide lots of nucleotide sequences into complete cds and partial in a given fasta file?
alignment blast sequence
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
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0
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2.8k
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Comment: Comment: How to divide lots of nucleotide sequences into complete cds and partial in a gi
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
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0
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3.2k
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Comment: C: A script to assess the transcriptome assembly quality in terms of blastx and tbl
10.5 years ago by seta ★ 1.9k
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2
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5.5k
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Comment: C: Error during Trinity running with the recent version?
10.5 years ago by seta ★ 1.9k
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0
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9.3k
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Comment: Comment: How to change fastq reads header for running Trinity on them?
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
0
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1
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9.3k
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Comment: Comment: How to change fastq reads header for running Trinity on them?
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
0
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1
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9.3k
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Comment: C: How to change fastq reads header for running Trinity on them?
10.5 years ago by seta ★ 1.9k
0
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1
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2.8k
views
Comment: Comment: How to set wall time for trinity assembler?
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
2
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3
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2.8k
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How to set wall time for trinity assembler?
Assembly next-gen RNA-Seq
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
0
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0
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3.3k
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Comment: Comment: blast running for several splitted query
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
9
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4
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3.8k
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Is there any tool or script to evaluate transcriptome assembly quality in terms of accuracy, completeness, contiguity, and gene fusions?
RNA-Seq Assembly alignment
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.9k
0
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1
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6.8k
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Answer: A: Trinity assembly validation and statistics
10.6 years ago by seta ★ 1.9k
1
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1
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6.8k
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Answer: Answer: Trinity assembly validation and statistics
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.9k
2
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1
reply
3.5k
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Answer: A: get chromosomal location of housekeeping genes
updated 4.6 years ago by 45k • written 10.6 years ago by ★ 1.9k
0
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1
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2.3k
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Answer: A: Pair-end sequences assembly with Trinity (data mining doubt)
updated 4.6 years ago by 45k • written 10.6 years ago by ★ 1.9k
0
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0
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3.0k
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Comment: Comment: Tool to detecte transcript with putative framshifts in the de novo assembled tra
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.9k
3
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9
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3.0k
views
Tool to detecte transcript with putative framshifts in the de novo assembled transcriptome
Assembly RNA-Seq frame-shift blast alignment
updated 3.4 years ago by 45k • written 10.7 years ago by ★ 1.9k
1
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5
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2.5k
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The origin of transcripts with putative frameshift in the de novo assembled transcriptome?
trapid next-gen Assembly frame-shift RNA-Seq
updated 3.4 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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0
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3.0k
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Comment: C: Tool to detecte transcript with putative framshifts in the de novo assembled tra
10.6 years ago by seta ★ 1.9k
0
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1
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2.5k
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Comment: Comment: The origin of transcripts with putative frameshift in the de novo assembled tran
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.9k
0
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1
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2.7k
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Comment: Comment: TranscriptDecoder and finding ORF
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.9k
0
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1
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3.8k
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Comment: Comment: Is there any tool or script to evaluate transcriptome assembly quality in terms
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 1.9k
4
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17
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4.6k
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6 follow
Please share the best tool for de novo motif discovery in large dataset
genome rna-seq sequence
updated 3.4 years ago by 45k • written 10.8 years ago by ★ 1.9k
0
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3
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2.7k
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TranscriptDecoder and finding ORF
blast RNA-Seq ngs
updated 3.4 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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3
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3.0k
views
Comment: Comment: Tool to detecte transcript with putative framshifts in the de novo assembled tra
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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0
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3.0k
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Comment: C: Tool to detecte transcript with putative framshifts in the de novo assembled tra
10.7 years ago by seta ★ 1.9k
0
votes
1
reply
2.5k
views
Comment: Comment: The origin of transcripts with putative frameshift in the de novo assembled tran
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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0
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4.9k
views
Comment: Comment: Getting all translated ORFs from 6 frame not just longest ones
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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0
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3.0k
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Answer: Answer: Predict AA sequence from assembled transcripts
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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0
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7.6k
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Comment: C: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
10.7 years ago by seta ★ 1.9k
4
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6
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7.6k
views
How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequencing?
RNA-Seq next-gen genome
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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0
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7.6k
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Comment: Comment: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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1
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2.6k
views
Answer: Answer: why cd-hit-est tool could not recognize identical contigs in the assembled trans
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
1
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3
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2.6k
views
why cd-hit-est tool could not recognize identical contigs in the assembled transcriptome input file?
RNA-Seq Assembly blast
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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1
reply
6.2k
views
Comment: Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by 45k • written 10.7 years ago by ★ 1.9k
0
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1
reply
6.2k
views
Comment: Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by 45k • written 10.7 years ago by ★ 1.9k
1
vote
9
replies
6.2k
views
High quality de novo transcriptome assembly rely on merging multiple assembly?
Assembly next-gen RNA-Seq
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.9k
0
votes
0
replies
6.2k
views
Comment: Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.9k
0
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1
reply
2.5k
views
Comment: C: Alternative way for annotation of assembled transcriptome using BLASTX
10.8 years ago by seta ★ 1.9k
0
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6
replies
2.5k
views
Alternative way for annotation of assembled transcriptome using BLASTX
blast Assembly RNA-Seq
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.9k
0
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1
reply
4.5k
views
Comment: Comment: Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.9k
1
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4
replies
4.5k
views
Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
ChIP-Seq sequence genome
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.9k
0
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1
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4.6k
views
Comment: C: Please share the best tool for de novo motif discovery in large dataset
10.8 years ago by seta ★ 1.9k
868 results • Page 16 of 18
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