Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
19k
views
Comment:
C: how to extract best hits of blast in terms of e-value, identity,...?
10.4 years ago by
seta
★ 1.9k
0
votes
1
reply
19k
views
Comment:
Comment: how to extract best hits of blast in terms of e-value, identity,...?
updated 2.8 years ago by
Ram
45k • written 10.4 years ago by
seta
★ 1.9k
0
votes
0
replies
2.2k
views
Comment:
Comment: How to compute the number of unique proteins hit found in the blastx search
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
1
reply
2.2k
views
Comment:
Comment: How to compute the number of unique proteins hit found in the blastx search
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
1
vote
5
replies
2.2k
views
How to compute the number of unique proteins hit found in the blastx search
blast
RNA-Seq
alignment
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
3
replies
3.2k
views
Script to assess the transcriptome assembly quality in terms of blastx and tblasn results?
Assembly
blast
RNA-Seq
sequencing
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
0
replies
2.8k
views
Comment:
C: How to divide lots of nucleotide sequences into complete cds and partial in a gi
10.5 years ago by
seta
★ 1.9k
0
votes
4
replies
2.8k
views
How to divide lots of nucleotide sequences into complete cds and partial in a given fasta file?
alignment
blast
sequence
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
0
replies
2.8k
views
Comment:
Comment: How to divide lots of nucleotide sequences into complete cds and partial in a gi
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
0
replies
3.2k
views
Comment:
C: A script to assess the transcriptome assembly quality in terms of blastx and tbl
10.5 years ago by
seta
★ 1.9k
0
votes
2
replies
5.5k
views
Comment:
C: Error during Trinity running with the recent version?
10.5 years ago by
seta
★ 1.9k
0
votes
0
replies
9.3k
views
Comment:
Comment: How to change fastq reads header for running Trinity on them?
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
1
reply
9.3k
views
Comment:
Comment: How to change fastq reads header for running Trinity on them?
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
1
reply
9.3k
views
Comment:
C: How to change fastq reads header for running Trinity on them?
10.5 years ago by
seta
★ 1.9k
0
votes
1
reply
2.8k
views
Comment:
Comment: How to set wall time for trinity assembler?
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
2
votes
3
replies
2.8k
views
How to set wall time for trinity assembler?
Assembly
next-gen
RNA-Seq
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
0
votes
0
replies
3.3k
views
Comment:
Comment: blast running for several splitted query
updated 2.8 years ago by
Ram
45k • written 10.5 years ago by
seta
★ 1.9k
9
votes
4
replies
3.8k
views
Is there any tool or script to evaluate transcriptome assembly quality in terms of accuracy, completeness, contiguity, and gene fusions?
RNA-Seq
Assembly
alignment
updated 3.4 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
0
votes
1
reply
6.8k
views
Answer:
A: Trinity assembly validation and statistics
10.6 years ago by
seta
★ 1.9k
1
vote
1
reply
6.8k
views
Answer:
Answer: Trinity assembly validation and statistics
updated 3.4 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
2
votes
1
reply
3.5k
views
Answer:
A: get chromosomal location of housekeeping genes
updated 4.6 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
0
votes
1
reply
2.3k
views
Answer:
A: Pair-end sequences assembly with Trinity (data mining doubt)
updated 4.6 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
0
votes
0
replies
3.0k
views
Comment:
Comment: Tool to detecte transcript with putative framshifts in the de novo assembled tra
updated 3.4 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
3
votes
9
replies
3.0k
views
Tool to detecte transcript with putative framshifts in the de novo assembled transcriptome
Assembly
RNA-Seq
frame-shift
blast
alignment
updated 3.4 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
1
vote
5
replies
2.5k
views
The origin of transcripts with putative frameshift in the de novo assembled transcriptome?
trapid
next-gen
Assembly
frame-shift
RNA-Seq
updated 3.4 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
0
replies
3.0k
views
Comment:
C: Tool to detecte transcript with putative framshifts in the de novo assembled tra
10.6 years ago by
seta
★ 1.9k
0
votes
1
reply
2.5k
views
Comment:
Comment: The origin of transcripts with putative frameshift in the de novo assembled tran
updated 3.4 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
0
votes
1
reply
2.7k
views
Comment:
Comment: TranscriptDecoder and finding ORF
updated 3.4 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
0
votes
1
reply
3.8k
views
Comment:
Comment: Is there any tool or script to evaluate transcriptome assembly quality in terms
updated 3.4 years ago by
Ram
45k • written 10.6 years ago by
seta
★ 1.9k
4
votes
17
replies
4.6k
views
6 follow
Please share the best tool for de novo motif discovery in large dataset
genome
rna-seq
sequence
updated 3.4 years ago by
Ram
45k • written 10.8 years ago by
seta
★ 1.9k
0
votes
3
replies
2.7k
views
TranscriptDecoder and finding ORF
blast
RNA-Seq
ngs
updated 3.4 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
3
replies
3.0k
views
Comment:
Comment: Tool to detecte transcript with putative framshifts in the de novo assembled tra
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
0
replies
3.0k
views
Comment:
C: Tool to detecte transcript with putative framshifts in the de novo assembled tra
10.7 years ago by
seta
★ 1.9k
0
votes
1
reply
2.5k
views
Comment:
Comment: The origin of transcripts with putative frameshift in the de novo assembled tran
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
0
replies
4.9k
views
Comment:
Comment: Getting all translated ORFs from 6 frame not just longest ones
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
0
replies
3.0k
views
Answer:
Answer: Predict AA sequence from assembled transcripts
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
0
replies
7.6k
views
Comment:
C: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
10.7 years ago by
seta
★ 1.9k
4
votes
6
replies
7.6k
views
How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequencing?
RNA-Seq
next-gen
genome
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
0
replies
7.6k
views
Comment:
Comment: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
1
reply
2.6k
views
Answer:
Answer: why cd-hit-est tool could not recognize identical contigs in the assembled trans
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
1
vote
3
replies
2.6k
views
why cd-hit-est tool could not recognize identical contigs in the assembled transcriptome input file?
RNA-Seq
Assembly
blast
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
1
reply
6.2k
views
Comment:
Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
0
votes
1
reply
6.2k
views
Comment:
Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
1
vote
9
replies
6.2k
views
High quality de novo transcriptome assembly rely on merging multiple assembly?
Assembly
next-gen
RNA-Seq
updated 3.6 years ago by
Ram
45k • written 10.8 years ago by
seta
★ 1.9k
0
votes
0
replies
6.2k
views
Comment:
Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by
Ram
45k • written 10.8 years ago by
seta
★ 1.9k
0
votes
1
reply
2.5k
views
Comment:
C: Alternative way for annotation of assembled transcriptome using BLASTX
10.8 years ago by
seta
★ 1.9k
0
votes
6
replies
2.5k
views
Alternative way for annotation of assembled transcriptome using BLASTX
blast
Assembly
RNA-Seq
updated 3.6 years ago by
Ram
45k • written 10.8 years ago by
seta
★ 1.9k
0
votes
1
reply
4.5k
views
Comment:
Comment: Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
updated 3.6 years ago by
Ram
45k • written 10.8 years ago by
seta
★ 1.9k
1
vote
4
replies
4.5k
views
Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
ChIP-Seq
sequence
genome
updated 3.6 years ago by
Ram
45k • written 10.8 years ago by
seta
★ 1.9k
0
votes
1
reply
4.6k
views
Comment:
C: Please share the best tool for de novo motif discovery in large dataset
10.8 years ago by
seta
★ 1.9k
868 results • Page
16 of 18
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6