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How to create a signature matrix, using scRNA-seq data, for downstream CIBERSORTx deconvolution of bulk data when the data is too heavy?
CIBERSORTx deconvolution Seurat scRNA-seq bulkRNA-seq
11 months ago by Fossil ▴ 30
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872
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Poor alignment post-SortMeRNA (rRNA removal)
STAR rRNA RNAseq SortMeRNA
updated 16 months ago by 3.9k • written 16 months ago by ▴ 30
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Comment: Comment: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
17 months ago by Fossil ▴ 30
6
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3
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1.9k
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GSEA with fgsea package and using stat from DESeq2 output - what to do with NA padj values?
RNA-seq DESeq2 GSEA
17 months ago by Fossil ▴ 30
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993
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Comment: Comment: Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
17 months ago by Fossil ▴ 30
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2
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Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
RNAseq
updated 17 months ago by 154k • written 17 months ago by ▴ 30
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