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How to create a signature matrix, using scRNA-seq data, for downstream CIBERSORTx deconvolution of bulk data when the data is too heavy?
CIBERSORTx
deconvolution
Seurat
scRNA-seq
bulkRNA-seq
8 months ago by
Fossil
▴ 30
0
votes
1
reply
732
views
Poor alignment post-SortMeRNA (rRNA removal)
STAR
rRNA
RNAseq
SortMeRNA
updated 13 months ago by
andres.firrincieli
3.9k • written 13 months ago by
Fossil
▴ 30
1
vote
0
replies
1.6k
views
Comment:
Comment: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
13 months ago by
Fossil
▴ 30
6
votes
3
replies
1.6k
views
GSEA with fgsea package and using stat from DESeq2 output - what to do with NA padj values?
RNA-seq
DESeq2
GSEA
13 months ago by
Fossil
▴ 30
0
votes
0
replies
854
views
Comment:
Comment: Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
13 months ago by
Fossil
▴ 30
0
votes
2
replies
854
views
Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
RNAseq
updated 14 months ago by
GenoMax
152k • written 14 months ago by
Fossil
▴ 30
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