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2
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Comment: Comment: Motif analysis
updated 12 weeks ago by 16k • written 12 weeks ago by ▴ 490
2
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0
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973
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Comment: Comment: Seeking chloroplast and mitochondrial reference for barley
8 months ago by b.contreras.moreira ▴ 490
2
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0
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1.2k
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Answer: Answer: Best way to assess relatedness of eukaryotic organisms from sequencing reads?
8 months ago by b.contreras.moreira ▴ 490
3
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0
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1.4k
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Answer: Answer: VCF filtering with Allele Balance (AB) using FilterVcf (Picard)
8 months ago by b.contreras.moreira ▴ 490
0
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0
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1.5k
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Comment: Comment: Reverse Engineer a PWM from a logo?
10 months ago by b.contreras.moreira ▴ 490
3
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0
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1.0k
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Answer: Answer: Can different genes encode the same proteins?
11 months ago by b.contreras.moreira ▴ 490
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0
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1.6k
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Comment: Comment: Can we construct single pangenome for different crops
11 months ago by b.contreras.moreira ▴ 490
4
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1
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1.6k
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Answer: Answer: Can we construct single pangenome for different crops
11 months ago by b.contreras.moreira ▴ 490
0
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0
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1.3k
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
12 months ago by b.contreras.moreira ▴ 490
1
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1
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1.3k
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
12 months ago by b.contreras.moreira ▴ 490
0
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1
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1.7k
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Comment: Comment: Basic de novo assembly of plant genome
12 months ago by b.contreras.moreira ▴ 490
0
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0
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666
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Comment: Comment: Seeking Tool to Convert Chromosome Coordinates to cDNA Coordinates for Arabidops
13 months ago by b.contreras.moreira ▴ 490
0
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0
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618
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Comment: Comment: Identify unique amino acids in a seuence of interest present in a MSA block
14 months ago by b.contreras.moreira ▴ 490
2
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1
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2.8k
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Answer: Answer: comparison between a selected genes of a new strain and the same genes of the re
14 months ago by b.contreras.moreira ▴ 490
0
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0
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3.4k
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Comment: Comment: What to consider Bit score or E value
14 months ago by b.contreras.moreira ▴ 490
0
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0
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857
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Comment: Comment: How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using
15 months ago by b.contreras.moreira ▴ 490
1
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0
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1.1k
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Answer: Answer: Clusters of orthologous research tools
15 months ago by b.contreras.moreira ▴ 490
0
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0
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666
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Answer: Answer: Allele frequency in gene sequence
16 months ago by b.contreras.moreira ▴ 490
1
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0
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751
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Answer: Answer: Using SwissProt vs NR database for PSSM generation
16 months ago by b.contreras.moreira ▴ 490
0
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0
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1.4k
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Comment: Comment: How to know protomter position in the chromosome?
17 months ago by b.contreras.moreira ▴ 490
2
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2
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1.3k
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Answer: Answer: FASTQ header correction to remove .1 and .2 from paired end - SRA files
17 months ago by b.contreras.moreira ▴ 490
3
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1
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3.4k
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Answer: Answer: NCBI vs Ensembl - Ortholog genes Information
18 months ago by b.contreras.moreira ▴ 490
0
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1
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1.1k
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Comment: Comment: perl Error - needLargeMem Bigwig
18 months ago by b.contreras.moreira ▴ 490
0
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1
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1.9k
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Comment: Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
18 months ago by b.contreras.moreira ▴ 490
1
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1
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1.9k
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Answer: Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
18 months ago by b.contreras.moreira ▴ 490
3
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0
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1.3k
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Answer: Answer: TFs and Gene databases
18 months ago by b.contreras.moreira ▴ 490
0
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0
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6.2k
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Answer: Answer: What purposes can TPM values be used for?
18 months ago by b.contreras.moreira ▴ 490
0
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0
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961
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Answer: Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
19 months ago by b.contreras.moreira ▴ 490
1
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0
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909
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Comment: Comment: How to calculate identity percentage between proteins contained in a FASTA file?
19 months ago by b.contreras.moreira ▴ 490
2
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1
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1.6k
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Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
19 months ago by b.contreras.moreira ▴ 490
0
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0
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1.4k
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Comment: Comment: Odd results with BLAST remote
19 months ago by b.contreras.moreira ▴ 490
2
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2
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1.4k
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Answer: Answer: Odd results with BLAST remote
19 months ago by b.contreras.moreira ▴ 490
0
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1
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980
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Answer: Answer: Beagle imputation
19 months ago by b.contreras.moreira ▴ 490
1
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0
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1.7k
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Comment: Comment: NCBI MEGABLAST versus UCSC BLAT
19 months ago by b.contreras.moreira ▴ 490
1
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1
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1.7k
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Answer: Answer: NCBI MEGABLAST versus UCSC BLAT
19 months ago by b.contreras.moreira ▴ 490
4
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2
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4.0k
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Answer: Answer: How to BLAST more than 5 sequences against UniProt database?
19 months ago by b.contreras.moreira ▴ 490
0
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0
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3.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
19 months ago by b.contreras.moreira ▴ 490
0
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1
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3.7k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
20 months ago by b.contreras.moreira ▴ 490
1
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0
replies
2.5k
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Comment: Comment: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
20 months ago by b.contreras.moreira ▴ 490
5
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2
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2.4k
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Answer: Answer: Pan genome of plant
20 months ago by b.contreras.moreira ▴ 490
1
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1
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2.5k
views
Answer: Answer: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
20 months ago by b.contreras.moreira ▴ 490
0
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1
reply
3.7k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
20 months ago by b.contreras.moreira ▴ 490
0
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1
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3.7k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
20 months ago by b.contreras.moreira ▴ 490
2
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18
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3.7k
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error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
19 months ago by b.contreras.moreira ▴ 490
0
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1
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3.7k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
20 months ago by b.contreras.moreira ▴ 490
0
votes
1
reply
3.7k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
20 months ago by b.contreras.moreira ▴ 490
0
votes
1
reply
3.7k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
20 months ago by b.contreras.moreira ▴ 490
0
votes
1
reply
3.7k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
20 months ago by b.contreras.moreira ▴ 490
1
vote
1
reply
759
views
adding new assemblies to previously built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
updated 20 months ago by ▴ 420 • written 20 months ago by ▴ 490
0
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0
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1.7k
views
Answer: Answer: converting VCF files to TSV file
20 months ago by b.contreras.moreira ▴ 490
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