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2
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Comment: Comment: Motif analysis
updated 6 weeks ago by 16k • written 6 weeks ago by ▴ 490
2
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0
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837
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Comment: Comment: Seeking chloroplast and mitochondrial reference for barley
7 months ago by b.contreras.moreira ▴ 490
2
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0
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1.1k
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Answer: Answer: Best way to assess relatedness of eukaryotic organisms from sequencing reads?
7 months ago by b.contreras.moreira ▴ 490
3
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0
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1.2k
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Answer: Answer: VCF filtering with Allele Balance (AB) using FilterVcf (Picard)
7 months ago by b.contreras.moreira ▴ 490
0
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0
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1.4k
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Comment: Comment: Reverse Engineer a PWM from a logo?
9 months ago by b.contreras.moreira ▴ 490
3
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0
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925
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Answer: Answer: Can different genes encode the same proteins?
9 months ago by b.contreras.moreira ▴ 490
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0
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1.4k
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Comment: Comment: Can we construct single pangenome for different crops
9 months ago by b.contreras.moreira ▴ 490
4
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1
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1.4k
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Answer: Answer: Can we construct single pangenome for different crops
10 months ago by b.contreras.moreira ▴ 490
0
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0
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1.2k
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
10 months ago by b.contreras.moreira ▴ 490
1
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1
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1.2k
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
10 months ago by b.contreras.moreira ▴ 490
0
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1
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1.5k
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Comment: Comment: Basic de novo assembly of plant genome
11 months ago by b.contreras.moreira ▴ 490
0
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0
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594
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Comment: Comment: Seeking Tool to Convert Chromosome Coordinates to cDNA Coordinates for Arabidops
11 months ago by b.contreras.moreira ▴ 490
0
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0
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577
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Comment: Comment: Identify unique amino acids in a seuence of interest present in a MSA block
12 months ago by b.contreras.moreira ▴ 490
2
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1
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2.6k
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Answer: Answer: comparison between a selected genes of a new strain and the same genes of the re
12 months ago by b.contreras.moreira ▴ 490
0
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0
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2.9k
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Comment: Comment: What to consider Bit score or E value
13 months ago by b.contreras.moreira ▴ 490
0
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0
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766
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Comment: Comment: How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using
14 months ago by b.contreras.moreira ▴ 490
1
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0
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975
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Answer: Answer: Clusters of orthologous research tools
14 months ago by b.contreras.moreira ▴ 490
0
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0
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621
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Answer: Answer: Allele frequency in gene sequence
14 months ago by b.contreras.moreira ▴ 490
1
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0
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633
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Answer: Answer: Using SwissProt vs NR database for PSSM generation
15 months ago by b.contreras.moreira ▴ 490
0
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0
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1.3k
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Comment: Comment: How to know protomter position in the chromosome?
16 months ago by b.contreras.moreira ▴ 490
2
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2
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1.3k
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Answer: Answer: FASTQ header correction to remove .1 and .2 from paired end - SRA files
16 months ago by b.contreras.moreira ▴ 490
3
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1
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2.9k
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Answer: Answer: NCBI vs Ensembl - Ortholog genes Information
16 months ago by b.contreras.moreira ▴ 490
0
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1
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959
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Comment: Comment: perl Error - needLargeMem Bigwig
16 months ago by b.contreras.moreira ▴ 490
0
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1
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1.8k
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Comment: Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
16 months ago by b.contreras.moreira ▴ 490
1
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1
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1.8k
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Answer: Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
16 months ago by b.contreras.moreira ▴ 490
3
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0
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1.2k
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Answer: Answer: TFs and Gene databases
17 months ago by b.contreras.moreira ▴ 490
0
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0
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5.4k
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Answer: Answer: What purposes can TPM values be used for?
17 months ago by b.contreras.moreira ▴ 490
0
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0
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884
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Answer: Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
17 months ago by b.contreras.moreira ▴ 490
1
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0
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834
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Comment: Comment: How to calculate identity percentage between proteins contained in a FASTA file?
17 months ago by b.contreras.moreira ▴ 490
2
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1
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1.5k
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Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
17 months ago by b.contreras.moreira ▴ 490
0
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0
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1.3k
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Comment: Comment: Odd results with BLAST remote
17 months ago by b.contreras.moreira ▴ 490
2
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2
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1.3k
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Answer: Answer: Odd results with BLAST remote
18 months ago by b.contreras.moreira ▴ 490
0
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1
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915
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Answer: Answer: Beagle imputation
18 months ago by b.contreras.moreira ▴ 490
1
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0
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1.5k
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Comment: Comment: NCBI MEGABLAST versus UCSC BLAT
18 months ago by b.contreras.moreira ▴ 490
1
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1
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1.5k
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Answer: Answer: NCBI MEGABLAST versus UCSC BLAT
18 months ago by b.contreras.moreira ▴ 490
4
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2
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3.4k
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Answer: Answer: How to BLAST more than 5 sequences against UniProt database?
18 months ago by b.contreras.moreira ▴ 490
0
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0
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3.5k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
0
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1
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3.5k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
1
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0
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2.2k
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Comment: Comment: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
18 months ago by b.contreras.moreira ▴ 490
5
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2
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2.2k
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Answer: Answer: Pan genome of plant
18 months ago by b.contreras.moreira ▴ 490
1
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1
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2.2k
views
Answer: Answer: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
18 months ago by b.contreras.moreira ▴ 490
0
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1
reply
3.5k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
0
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1
reply
3.5k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
2
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18
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3.5k
views
error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
18 months ago by b.contreras.moreira ▴ 490
0
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1
reply
3.5k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
0
votes
1
reply
3.5k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
0
votes
1
reply
3.5k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
0
votes
1
reply
3.5k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
18 months ago by b.contreras.moreira ▴ 490
1
vote
1
reply
672
views
adding new assemblies to previously built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
updated 18 months ago by ▴ 420 • written 18 months ago by ▴ 490
0
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0
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1.6k
views
Answer: Answer: converting VCF files to TSV file
19 months ago by b.contreras.moreira ▴ 490
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