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Comment: C: Troubleshooting low quality mapping
8.8 years ago by Brian Bushnell 20k
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14k
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Comment: Comment: NGS reads simulation
updated 3.6 years ago by 45k • written 8.8 years ago by 20k
0
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1
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4.8k
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Comment: C: Troubleshooting low quality mapping
8.8 years ago by Brian Bushnell 20k
0
votes
0
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4.8k
views
Comment: C: Troubleshooting low quality mapping
8.8 years ago by Brian Bushnell 20k
0
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1
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2.3k
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Comment: C: Tophat2 very high percentage of multiple alignments
8.8 years ago by Brian Bushnell 20k
1
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1
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4.3k
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Comment: C: JGI's Taxonomy Server
8.8 years ago by Brian Bushnell 20k
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1
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3.4k
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Comment: C: bowtie2 filter for maximum alignment score
8.8 years ago by Brian Bushnell 20k
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0
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3.1k
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Comment: C: Fastx_reverse_complement error. Invalid quality score even with -Q33
8.8 years ago by Brian Bushnell 20k
2
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1
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3.1k
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Answer: C: Fastx_reverse_complement error. Invalid quality score even with -Q33
8.8 years ago by Brian Bushnell 20k
0
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0
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4.3k
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Comment: C: JGI's Taxonomy Server
8.8 years ago by Brian Bushnell 20k
0
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2
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4.3k
views
Comment: C: JGI's Taxonomy Server
8.8 years ago by Brian Bushnell 20k
1
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1
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4.7k
views
Answer: A: What's a good PacBio CLR read simulator?
8.8 years ago by Brian Bushnell 20k
0
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1
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2.3k
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Comment: C: Tophat2 very high percentage of multiple alignments
8.8 years ago by Brian Bushnell 20k
3
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0
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4.0k
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Answer: A: Filtering fastq file
8.8 years ago by Brian Bushnell 20k
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0
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2.9k
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Comment: C: Perl::ForkManager does not speed up ATCG calculation
8.8 years ago by Brian Bushnell 20k
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0
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6.9k
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Comment: C: bbmap command to extract mapped and unmapped pair end reads
8.8 years ago by Brian Bushnell 20k
1
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1
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4.8k
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Answer: A: Troubleshooting low quality mapping
8.8 years ago by Brian Bushnell 20k
1
vote
1
reply
7.1k
views
Answer: A: Fastq Trimmer by pattern
8.8 years ago by Brian Bushnell 20k
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0
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2.2k
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Comment: C: samtoroc.sh -- no truePositive hits
8.8 years ago by Brian Bushnell 20k
0
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1
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6.9k
views
Comment: C: bbmap command to extract mapped and unmapped pair end reads
8.8 years ago by Brian Bushnell 20k
2
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0
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11k
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Comment: C: NovaSeq from Illumina
8.8 years ago by Brian Bushnell 20k
0
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1
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6.9k
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Comment: C: bbmap command to extract mapped and unmapped pair end reads
8.8 years ago by Brian Bushnell 20k
1
vote
1
reply
6.9k
views
Answer: C: bbmap command to extract mapped and unmapped pair end reads
8.8 years ago by Brian Bushnell 20k
3
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1
reply
1.8k
views
Answer: A: Would a complete lack of heterozygotes in a population indicate the presence of
8.8 years ago by Brian Bushnell 20k
0
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1
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3.4k
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Comment: C: HISAT2 (graph index) alignment over InDels
8.8 years ago by Brian Bushnell 20k
0
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0
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2.7k
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Comment: C: latest tool for genome guided assembly
8.8 years ago by Brian Bushnell 20k
0
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0
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4.0k
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Comment: C: variant calling after mapping via bwa mem
8.8 years ago by Brian Bushnell 20k
0
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0
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2.0k
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Comment: C: Query to call SNP in Illumina pair end sequencing
8.8 years ago by Brian Bushnell 20k
1
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0
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2.1k
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Comment: C: intersect snp and exon coordinates
8.8 years ago by Brian Bushnell 20k
0
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1
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3.4k
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Comment: C: How to get correct options for Picard's AddOrReplaceReadGroups?
8.8 years ago by Brian Bushnell 20k
0
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0
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2.5k
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Comment: C: de novo assembly and SNP discovery
8.8 years ago by Brian Bushnell 20k
1
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0
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3.3k
views
Answer: A: How Many Chromosomes Have To Be Annotated For Human Beings?
8.8 years ago by Brian Bushnell 20k
1
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0
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2.8k
views
Answer: A: filtering the structural variants
8.8 years ago by Brian Bushnell 20k
3
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1
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2.5k
views
Answer: A: de novo assembly and SNP discovery
8.8 years ago by Brian Bushnell 20k
0
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1
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2.5k
views
Comment: C: de novo assembly and SNP discovery
8.8 years ago by Brian Bushnell 20k
2
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1
reply
2.0k
views
Answer: A: Query to call SNP in Illumina pair end sequencing
8.8 years ago by Brian Bushnell 20k
1
vote
1
reply
2.7k
views
Comment: C: latest tool for genome guided assembly
8.8 years ago by Brian Bushnell 20k
0
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1
reply
2.7k
views
Comment: C: latest tool for genome guided assembly
8.8 years ago by Brian Bushnell 20k
0
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0
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6.8k
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Comment: C: QC for Whole Exome Sequence Data
8.8 years ago by Brian Bushnell 20k
1
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3
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6.8k
views
Answer: C: QC for Whole Exome Sequence Data
8.8 years ago by Brian Bushnell 20k
2
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1
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2.2k
views
Answer: A: samtoroc.sh -- no truePositive hits
8.8 years ago by Brian Bushnell 20k
0
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0
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2.2k
views
Comment: C: samtoroc.sh -- no truePositive hits
8.8 years ago by Brian Bushnell 20k
0
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1
reply
8.2k
views
Comment: C: Relative abundance fro metagenomics samples
8.8 years ago by Brian Bushnell 20k
0
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0
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8.2k
views
Answer: C: Relative abundance fro metagenomics samples
8.8 years ago by Brian Bushnell 20k
1
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2
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5.9k
views
Answer: A: Difference between capture and WXS
8.8 years ago by Brian Bushnell 20k
0
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0
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136k
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Comment: C: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
8.8 years ago by Brian Bushnell 20k
7
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0
replies
15k
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Answer: A: Removing PCR duplicates from .fastq without .bam alignment
8.8 years ago by Brian Bushnell 20k
0
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1
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4.2k
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Comment: C: Problems with installation of Prodege decontamination software
8.8 years ago by Brian Bushnell 20k
1
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0
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2.3k
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Comment: C: non-ACGT characters in simulated RNA-seq reads
8.8 years ago by Brian Bushnell 20k
1
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1
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2.3k
views
Comment: C: non-ACGT characters in simulated RNA-seq reads
8.8 years ago by Brian Bushnell 20k
2,083 results • Page 22 of 42
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