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3.8k
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Comment: C: How to calculate true positive indels?
9.8 years ago by Brian Bushnell 20k
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1
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1.9k
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Comment: C: Alignment DNA sequence tool
9.8 years ago by Brian Bushnell 20k
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4.9k
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Answer: A: Trim Certain Nucleotides Off Fastq Reads
9.8 years ago by Brian Bushnell 20k
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2.2k
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Comment: C: Getting all possible options from primer with degenerate bases
9.8 years ago by Brian Bushnell 20k
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1
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11k
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Comment: C: What is wrong here with bbmap and java
9.8 years ago by Brian Bushnell 20k
2
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2.3k
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Comment: C: How to determine whether a contig is sex-linked
9.8 years ago by Brian Bushnell 20k
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7.0k
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Comment: C: best alignment tool for Ion Torrent data
9.8 years ago by Brian Bushnell 20k
2
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3.4k
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Comment: C: Tophat & IGV viewing
9.9 years ago by Brian Bushnell 20k
4
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5.5k
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Answer: Answer: Converting Phred64 fastq to Phred33 fastq
updated 3.1 years ago by 45k • written 9.9 years ago by 20k
2
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1
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8.6k
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Comment: Comment: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 3.5 years ago by 45k • written 9.9 years ago by 20k
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1
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2.4k
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Comment: A: Java for MSA to compare two sequences from different files
9.9 years ago by Brian Bushnell 20k
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3.6k
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Answer: A: batch program to convert nucleotide into protein
9.9 years ago by Brian Bushnell 20k
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9.2k
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Comment: C: Can Q10 be better than Q30
9.9 years ago by Brian Bushnell 20k
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3.0k
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Answer: Answer: Local alignment linear space
updated 3.1 years ago by 45k • written 9.9 years ago by 20k
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2
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22k
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Answer: Answer: Reliable Fastq compression programs
updated 3.1 years ago by 45k • written 9.9 years ago by 20k
1
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1
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5.4k
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Comment: C: mapping metagenomics samples to multiple references genome
10.0 years ago by Brian Bushnell 20k
2
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2
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3.9k
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Comment: Comment: how to compare 2 fasta sequences with perl
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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1
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5.4k
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Answer: Answer: mapping metagenomics samples to multiple references genome
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
1
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0
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2.6k
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Answer: Answer: short reads Assembly in contigs
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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0
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10k
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Comment: Comment: FASTQC and PacBio reads
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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1
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81k
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Comment: Comment: How To Remove The Same Sequences In The Fasta Files?
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
2
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1
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10k
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Answer: Answer: FASTQC and PacBio reads
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
3
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0
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5.2k
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Answer: Answer: NGS, coverage and read length appropriate for sequencing bacterial DNA with the
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
7
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3
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17k
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Comment: Comment: How to identify 16s sequences from binning data(contigs)?
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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6.2k
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Comment: Comment: How to find the shortest k-mer length that is unique in a large genome
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
3
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1
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4.2k
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Answer: Answer: Non-ATGC, small-case, 'N' characters in Fastq file
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
2
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1
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3.3k
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Comment: Comment: How to use multiples computational nodes/cores for Merging .fastq.gz files
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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4
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3.4k
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Answer: Answer: Phred/Phrap pipeline starting with FASTA file of paired-end reads and using a re
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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0
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3.4k
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Comment: Comment: Remove sequences below median or 75%-tile length in fasta files
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
1
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1
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3.4k
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Answer: Answer: Remove sequences below median or 75%-tile length in fasta files
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
16
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1
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17k
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Answer: Answer: How to identify 16s sequences from binning data(contigs)?
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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1
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18k
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Comment: Comment: Tool to separate human and mouse rna seq reads
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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0
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1.8k
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Answer: Answer: increase in SNP frequency towards the 3 end of reads
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
0
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2
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18k
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Comment: Comment: Tool to separate human and mouse rna seq reads
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
1
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1
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5.8k
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Answer: Answer: Extracting specific sequences from a big fasta file using ids of the sequences t
updated 3.1 years ago by 45k • written 10.0 years ago by 20k
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0
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3.5k
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Answer: Answer: Cutadapt list of adapter
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
1
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0
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3.4k
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Answer: Answer: Can you combine nt and WGS nucleotide databases for a BLAST search and make it n
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
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0
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3.0k
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Comment: Comment: flip mate-pair libraries from rf to fr
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
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0
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3.1k
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Comment: Comment: Selective assembly of Genome
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
0
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0
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5.2k
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Comment: Comment: Aligner for super-short sequences
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
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0
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3.6k
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Comment: Comment: average coverage of Illumina 2x250 PE vs Illumina 2x100 PE in variant analysis
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
0
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1
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3.1k
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Comment: Comment: Selective assembly of Genome
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
1
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2
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3.6k
views
Answer: Answer: average coverage of Illumina 2x250 PE vs Illumina 2x100 PE in variant analysis
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
0
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0
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12k
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Comment: C: How to make sure there is no duplicate sequence in a fasta file?
10.0 years ago by Brian Bushnell 20k
1
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0
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3.7k
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Answer: Answer: Bwa alignment problem of single end DNA reads
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
2
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1
reply
2.6k
views
Answer: Answer: Assemble mix of two plasmids which have partially similar sequence
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
1
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1
reply
3.0k
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Answer: Answer: How do I interpret the adapter output from FastQC?
updated 3.0 years ago by 45k • written 10.0 years ago by 20k
1
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0
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2.8k
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Comment: Comment: What Quality Control software should i use?
updated 3.0 years ago by 45k • written 10.1 years ago by 20k
0
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0
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4.3k
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Comment: C: Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment com
10.1 years ago by Brian Bushnell 20k
0
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0
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5.5k
views
Comment: Comment: Extract sequences from fasta NOT present in list of IDs
updated 3.0 years ago by 45k • written 10.1 years ago by 20k
2,083 results • Page 34 of 42
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