Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
3.3k
views
Answer: Answer: Extract 6mer and headers from fasta and compile into list
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
5.1k
views
Answer: A: What are most recommended / state-of-the-art whole genome FASTQ datasets for ben
10.5 years ago by Brian Bushnell 20k
0
votes
0
replies
4.3k
views
Comment: Comment: tophat2 mapping merged PE and nonmerged PE
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
3
votes
3
replies
4.5k
views
Answer: Answer: Which command line programs are parallelizable?
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
0
replies
4.4k
views
Answer: Answer: Chip-seq reads' trimming
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
4.3k
views
Answer: Answer: How to calculate the joint entropy H(X,Y,Z) where X, Y, Z are position of MSA
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
3
votes
0
replies
3.5k
views
Answer: Answer: How to add 'placeholder' quality scores to FASTA files (for converting FASTA wit
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
0
replies
5.4k
views
Comment: Comment: bwa mem multiple alignments doesn't work
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
4.7k
views
Comment: Comment: bwa mapping after fastx-trimmer
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
3
votes
1
reply
5.4k
views
Answer: Answer: bwa mem multiple alignments doesn't work
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
2
votes
2
replies
4.3k
views
Comment: Comment: tophat2 mapping merged PE and nonmerged PE
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
1
reply
3.2k
views
Comment: C: simulate reads with zero mutations
10.5 years ago by Brian Bushnell 20k
0
votes
1
reply
4.7k
views
Comment: Comment: bwa mapping after fastx-trimmer
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
2
votes
1
reply
4.7k
views
Answer: Answer: bwa mapping after fastx-trimmer
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
3.3k
views
Comment: Comment: mutiple primer check algorithm
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
4.3k
views
Comment: Comment: tophat2 mapping merged PE and nonmerged PE
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
1
reply
4.3k
views
Comment: Comment: tophat2 mapping merged PE and nonmerged PE
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
1
reply
4.3k
views
Answer: Answer: tophat2 mapping merged PE and nonmerged PE
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
0
replies
4.3k
views
Answer: Answer: tophat2 mapping merged PE and nonmerged PE
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
1
reply
6.3k
views
Comment: Comment: Filtering sanger_fastq, illumina_fastq files using Fastx-Toolkit
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
6.3k
views
Comment: Comment: Effects of random hexamer priming bias in RNA-Seq de novo assembly
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
4.7k
views
Comment: Comment: paired-end sequence with two seperate files
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
1
reply
4.7k
views
Answer: Answer: paired-end sequence with two seperate files
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
2.4k
views
Answer: Answer: how to remove adaptor sequence which has more than 1 indexing barcode?
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
8.4k
views
Comment: Comment: Question about converting SAM to fastq and adding /1 /2 to the headers
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
1
reply
6.3k
views
Answer: Answer: Effects of random hexamer priming bias in RNA-Seq de novo assembly
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
1
reply
30k
views
Comment: Comment: hg19 vs hg38 in two pictures
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
30k
views
Comment: Comment: hg19 vs hg38 in two pictures
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
30k
views
Comment: C: hg19 vs hg38 in two pictures
10.5 years ago by Brian Bushnell 20k
1
vote
0
replies
3.5k
views
Comment: Comment: Align the oligos with the fasta sequences
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
3.5k
views
Answer: Answer: Align the oligos with the fasta sequences
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
3
replies
30k
views
Answer: Answer: hg19 vs hg38 in two pictures
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
13
votes
1
reply
107k
views
Comment: Comment: merge large amount of fastq files into a single one
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
1.9k
views
Comment: Comment: Should I do RNAseq?
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
0
votes
2
replies
1.9k
views
Answer: Answer: Should I do RNAseq?
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
1
vote
0
replies
2.6k
views
Comment: Comment: Healthy donor RNA-seq samples
updated 3.3 years ago by 45k • written 10.5 years ago by 20k
4
votes
1
reply
17k
views
Answer: Answer: How to remove space in headers of fasta files
updated 3.4 years ago by 45k • written 10.5 years ago by 20k
2
votes
0
replies
3.5k
views
Answer: Answer: merge PE reads for Transcript De-Novo Assembly ??
updated 3.4 years ago by 45k • written 10.5 years ago by 20k
0
votes
1
reply
4.6k
views
Comment: Comment: Reversing direction of chain files (E.g. from hg18-->hg19 to hg19-->hg18)
updated 3.4 years ago by 45k • written 10.5 years ago by 20k
2
votes
1
reply
4.6k
views
Answer: Answer: Reversing direction of chain files (E.g. from hg18-->hg19 to hg19-->hg18)
updated 3.4 years ago by 45k • written 10.5 years ago by 20k
0
votes
0
replies
11k
views
Answer: Answer: More loose criteria for bowtie2 mapping
updated 3.4 years ago by 45k • written 10.6 years ago by 20k
0
votes
2
replies
3.1k
views
Answer: Answer: Build Graph lost k-mers
updated 3.4 years ago by 45k • written 10.6 years ago by 20k
0
votes
0
replies
16k
views
Answer: A: Extracting specific FASTA sequences from a complex FASTA file
10.6 years ago by Brian Bushnell 20k
0
votes
0
replies
1.9k
views
Answer: Answer: Strange tophat2 results
updated 3.4 years ago by 45k • written 10.6 years ago by 20k
0
votes
0
replies
14k
views
Comment: C: small RNA-seq pipelines
10.6 years ago by Brian Bushnell 20k
0
votes
1
reply
14k
views
Comment: C: small RNA-seq pipelines
10.6 years ago by Brian Bushnell 20k
1
vote
0
replies
14k
views
Comment: Comment: bwa mem perfectly align reads over their entire length
updated 3.4 years ago by 45k • written 10.6 years ago by 20k
0
votes
0
replies
14k
views
Comment: Comment: small RNA-seq pipelines
updated 3.4 years ago by 45k • written 10.6 years ago by 20k
0
votes
0
replies
2.2k
views
Answer: Answer: Estimation sequencing sustitution error rate
updated 3.4 years ago by 45k • written 10.6 years ago by 20k
1
vote
1
reply
14k
views
Comment: Comment: small RNA-seq pipelines
updated 3.4 years ago by 45k • written 10.6 years ago by 20k
2,083 results • Page 39 of 42
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6