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Comment: Comment: small RNA-seq pipelines
updated 3.5 years ago by 45k • written 10.7 years ago by 20k
2
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1.7k
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Answer: Answer: How to search miseq data for large mutations
updated 3.6 years ago by 45k • written 10.7 years ago by 20k
1
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0
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3.2k
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Comment: Comment: why I got "bitwise FLAG" of "unmapped" and "mapping quality" in high value of "3
updated 3.6 years ago by 45k • written 10.7 years ago by 20k
1
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0
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9.5k
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Comment: Comment: How to compute physical per-base coverage from WGS paired-end reads?
updated 3.6 years ago by 45k • written 10.7 years ago by 20k
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1
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3.0k
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Comment: C: Fishy HiSeq2000 reads length
10.7 years ago by Brian Bushnell 20k
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10k
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Comment: Comment: How Do We Discourage Ad-Hoc Bioinformatic Analyses?
updated 3.6 years ago by 45k • written 10.7 years ago by 20k
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0
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5.0k
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Comment: Comment: Is "paired reads have different names" error due to ! at beginning of line in fa
updated 3.6 years ago by 45k • written 10.7 years ago by 20k
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0
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6.3k
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Comment: Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by 45k • written 10.7 years ago by 20k
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0
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19k
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Comment: C: Extraction of first sequences from a big fasta file
10.7 years ago by Brian Bushnell 20k
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0
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3.3k
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Comment: Comment: In search of "good" alternative splicing datasets for benchmarking purposes...
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
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1
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3.3k
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Comment: Comment: In search of "good" alternative splicing datasets for benchmarking purposes...
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
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0
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6.0k
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Comment: C: .bam file of human reference genome (hg19)
10.8 years ago by Brian Bushnell 20k
1
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1
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6.0k
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Answer: Answer: .bam file of human reference genome (hg19)
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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1
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9.5k
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Answer: Answer: How to compute physical per-base coverage from WGS paired-end reads?
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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2
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6.3k
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Comment: Comment: Long read-alignment + variant calling
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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6.3k
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Comment: Comment: Long read-alignment + variant calling
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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5.0k
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Comment: Comment: How to run Spades For Nextseq data
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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1
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6.3k
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Comment: Comment: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
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2
replies
6.3k
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Answer: Answer: Long read-alignment + variant calling
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
2
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0
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2.7k
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Answer: Answer: Does more data lead to better genome assembly?
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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1
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5.9k
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Comment: C: Must paired-end reads be in the same order in the two files for input to Tophat?
10.8 years ago by Brian Bushnell 20k
6
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1
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15k
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Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
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1
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9.1k
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Comment: C: Rename Duplicate ID's for Different Fasta Sequences on Windows 7
10.8 years ago by Brian Bushnell 20k
1
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0
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4.8k
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Comment: Comment: which tools you use to generate artificial NGS?
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
2
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0
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4.2k
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Comment: Comment: Runtime Needleman-Wunsch & Gotoh
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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2.4k
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Comment: C: how to execute mask filtering_algorithm
10.8 years ago by Brian Bushnell 20k
0
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1
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4.5k
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Comment: Comment: Masking redundancy/paralogy/repetitiveness in a genome assembly using a k-mer ap
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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7.7k
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Comment: Comment: tophat, the parameter "Expected inner distance between mate pairs"?
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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6.9k
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Comment: Comment: Unbelievably rapid NGS analysis by Churchill
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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1
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6.9k
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Comment: Comment: Unbelievably rapid NGS analysis by Churchill
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
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1
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6.9k
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Answer: Answer: Unbelievably rapid NGS analysis by Churchill
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
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3
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4.5k
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Answer: Answer: Masking redundancy/paralogy/repetitiveness in a genome assembly using a k-mer ap
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
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1
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2.6k
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Answer: A: Velvet assembly failure at low kmers
10.8 years ago by Brian Bushnell 20k
0
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0
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3.4k
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Comment: Comment: How is sequence identity affected by non-end gaps?
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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1
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23k
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Comment: Comment: Benchmark - Comparison of Different NGS Mappers
updated 3.7 years ago by 45k • written 10.8 years ago by 20k
2
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1
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5.6k
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Answer: Answer: How to assess the quality of metagenomics assembly?
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
7
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0
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7.5k
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Answer: Answer: dedupe.sh output from BBTools
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
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1
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7.5k
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Comment: Comment: dedupe.sh output from BBTools
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
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1
reply
8.8k
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Comment: C: Assembler for large genome de novo assembly with Illumina paired end reads of 15
10.8 years ago by Brian Bushnell 20k
0
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1
reply
14k
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Comment: Comment: How to extract all the mapped reads from bwa output
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
5
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4
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14k
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Answer: Answer: How to extract all the mapped reads from bwa output
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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11k
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Comment: Comment: Calculate percentage of bases covered less than nX in targeted sequencing experi
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
3
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2
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8.8k
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Comment: Comment: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
1
vote
1
reply
11k
views
Comment: Comment: Calculate percentage of bases covered less than nX in targeted sequencing experi
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
3
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1
reply
7.8k
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Comment: Comment: [samopen] SAM header is present: xxx sequences.
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
3
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1
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7.8k
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Answer: Answer: [samopen] SAM header is present: xxx sequences.
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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5.8k
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Comment: Comment: Error correction in sequence Assembly
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
3
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1
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8.8k
views
Answer: Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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0
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7.6k
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Comment: Comment: Problems in use of seqtk subseq
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
0
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1
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7.3k
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Comment: Comment: Confused about the quality control strategy of 16s pair_end sequence from Illumi
updated 3.6 years ago by 45k • written 10.8 years ago by 20k
2,083 results • Page 40 of 42
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