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1
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Comment: C: Stringtie and prepDE
5.9 years ago by michael.ante ★ 4.0k
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1
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2.8k
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Comment: C: Clipping primer after alignment
6.0 years ago by michael.ante ★ 4.0k
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6.2k
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Answer: A: is 0-based start and 1-based end of bed format not compatible with htseq-count?
6.0 years ago by michael.ante ★ 4.0k
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1.1k
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Comment: C: General guidance with project about gene duplication
6.0 years ago by michael.ante ★ 4.0k
1
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1.4k
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Comment: C: HT-seq-count default parameter to "score"secondary alignments contradicts its do
6.0 years ago by michael.ante ★ 4.0k
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3.8k
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Answer: A: sequence length distribution
6.0 years ago by michael.ante ★ 4.0k
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1.3k
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Answer: A: Bed file of union of all transcripts for a set of genes
6.0 years ago by michael.ante ★ 4.0k
1
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0
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2.5k
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Answer: A: How to count total small RNAs (known and novel) in my aligned reads?
6.0 years ago by michael.ante ★ 4.0k
0
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1
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3.8k
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Comment: C: Converting and sorting .sam at the same time
6.0 years ago by michael.ante ★ 4.0k
3
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1
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1.8k
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Answer: A: BAM File size increased after extracting unique reads
6.1 years ago by michael.ante ★ 4.0k
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0
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1.4k
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Answer: A: hisat2-build half done
6.3 years ago by michael.ante ★ 4.0k
1
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1
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37k
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Comment: C: Converstion of BED with scores into bigWig
6.4 years ago by michael.ante ★ 4.0k
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2
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3.0k
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Answer: A: mash configure error --with-gsl can not find gsl
updated 6.4 years ago by 153k • written 6.4 years ago by ★ 4.0k
0
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3.0k
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Comment: C: mash configure error --with-gsl can not find gsl
6.4 years ago by michael.ante ★ 4.0k
0
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0
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3.3k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
6.4 years ago by michael.ante ★ 4.0k
0
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1
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3.0k
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Comment: C: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
6.5 years ago by michael.ante ★ 4.0k
1
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1
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3.0k
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Answer: A: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
6.5 years ago by michael.ante ★ 4.0k
0
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1
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6.1k
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Comment: C: HTSeq & featureCounts show no features
6.5 years ago by michael.ante ★ 4.0k
0
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1
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6.1k
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Comment: C: HTSeq & featureCounts show no features
6.5 years ago by michael.ante ★ 4.0k
0
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1
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2.4k
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Comment: C: About the ERCC spike-in sequence reads quantification
6.5 years ago by michael.ante ★ 4.0k
0
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1
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2.4k
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Comment: C: About the ERCC spike-in sequence reads quantification
6.5 years ago by michael.ante ★ 4.0k
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0
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1.6k
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Comment: C: Is there a tool that filters a sam/bam file by the following: (1) similarity sco
6.5 years ago by michael.ante ★ 4.0k
1
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1
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2.7k
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Comment: C: col as names
6.5 years ago by michael.ante ★ 4.0k
3
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1
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1.5k
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Answer: C: Inconsistent number Pandaseq vs grep
6.5 years ago by michael.ante ★ 4.0k
0
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0
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2.5k
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Comment: C: Htseq-count result assistance
6.5 years ago by michael.ante ★ 4.0k
1
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1
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2.7k
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Comment: C: col as names
6.5 years ago by michael.ante ★ 4.0k
2
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0
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2.7k
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Comment: C: col as names
6.5 years ago by michael.ante ★ 4.0k
2
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0
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2.5k
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Answer: A: Htseq-count result assistance
6.5 years ago by michael.ante ★ 4.0k
0
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0
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2.2k
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Comment: C: Bowtie Index building for wheat genome
6.5 years ago by michael.ante ★ 4.0k
0
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0
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2.2k
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Comment: C: Bowtie Index building for wheat genome
6.5 years ago by michael.ante ★ 4.0k
1
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1
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6.0k
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Comment: C: STAR fusion error
6.5 years ago by michael.ante ★ 4.0k
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1
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6.0k
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Answer: C: STAR fusion error
6.5 years ago by michael.ante ★ 4.0k
1
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0
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1.6k
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Answer: A: STAR and HTSeq command line parameters for 3' mRNA-Seq data
6.5 years ago by michael.ante ★ 4.0k
2
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1
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6.0k
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Comment: C: STAR fusion error
6.5 years ago by michael.ante ★ 4.0k
6
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0
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8.3k
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Answer: C: How do I know if I have DNA contamination in RNA-seq data?
6.6 years ago by michael.ante ★ 4.0k
1
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0
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7.2k
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Comment: C: bedtools intersect error?
6.6 years ago by michael.ante ★ 4.0k
0
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1
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2.2k
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Comment: A: problem in conversion of sam to bam file
6.6 years ago by michael.ante ★ 4.0k
0
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0
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2.8k
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Comment: C: Alternative splicing analysis
6.6 years ago by michael.ante ★ 4.0k
2
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2
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2.8k
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Answer: A: HTseq code error repeatedly
6.6 years ago by michael.ante ★ 4.0k
0
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1
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1.9k
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Comment: C: count file zero
6.6 years ago by michael.ante ★ 4.0k
0
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0
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1.9k
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Comment: C: count file zero
6.6 years ago by michael.ante ★ 4.0k
0
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1
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1.9k
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Answer: A: count file zero
6.6 years ago by michael.ante ★ 4.0k
0
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0
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1.1k
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Comment: C: Finding smallest sequence which distinguish any DNA sample
6.6 years ago by michael.ante ★ 4.0k
1
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1
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1.1k
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Answer: A: Finding smallest sequence which distinguish any DNA sample
6.6 years ago by michael.ante ★ 4.0k
1
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0
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9.2k
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Comment: C: Remove duplicates in an extremely large text file
6.6 years ago by michael.ante ★ 4.0k
2
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0
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9.2k
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Comment: C: Remove duplicates in an extremely large text file
6.6 years ago by michael.ante ★ 4.0k
1
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0
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1.6k
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Comment: C: simulate DNA reads with unique molecular identifiers (UMIs)
6.6 years ago by michael.ante ★ 4.0k
0
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1
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5.1k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
6.6 years ago by michael.ante ★ 4.0k
2
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0
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13k
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Answer: A: The Longest Chromosome > Sizeof(Int32)
6.6 years ago by michael.ante ★ 4.0k
0
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0
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3.2k
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Comment: C: RNA-seq alignment against globin genes (HBA1, HBA1, and HBB)
6.6 years ago by michael.ante ★ 4.0k
454 results • Page 3 of 10
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