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Answer: A: FastX toolkit - problems with Collapser
5.8 years ago by michael.ante ★ 3.8k
0
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1
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1.9k
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Answer: A: get the intergenic regions anf its strain.
5.9 years ago by michael.ante ★ 3.8k
2
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1
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2.4k
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Answer: C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
5.9 years ago by michael.ante ★ 3.8k
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1
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2.8k
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Answer: A: cufflink output FPKM values
6.0 years ago by michael.ante ★ 3.8k
3
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1
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6.3k
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Answer: A: High Unassigned Ambiguity in Feature Counts
6.0 years ago by michael.ante ★ 3.8k
1
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1
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1.4k
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Answer: A: match gives me all NA in annotating my genes
6.1 years ago by michael.ante ★ 3.8k
4
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1
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2.0k
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Answer: C: HISAT output SAM file incorrect (only contains 3 columns of data)
6.1 years ago by michael.ante ★ 3.8k
1
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1
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5.3k
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Answer: A: samtools - Finding Average Fragment size for pair?
6.1 years ago by michael.ante ★ 3.8k
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2.9k
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Answer: A: Genomic coordinates for transcripts
6.1 years ago by michael.ante ★ 3.8k
2
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0
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2.7k
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Answer: A: FastQC results with abnormal GC content and Overrepresented sequences in RIP-seq
6.1 years ago by michael.ante ★ 3.8k
0
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1
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935
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Answer: A: Testing data for read mapping tool
6.1 years ago by michael.ante ★ 3.8k
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8.2k
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Answer: A: Convert Protein names to Gene names/symbols
6.1 years ago by michael.ante ★ 3.8k
5
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2
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17k
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Answer: A: grep a column based on a string
6.2 years ago by michael.ante ★ 3.8k
3
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2
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2.0k
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Answer: A: removing lines that don't match by grep
6.2 years ago by michael.ante ★ 3.8k
0
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0
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1.1k
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Answer: A: How to get human miRNA length file?
6.2 years ago by michael.ante ★ 3.8k
1
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1
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2.7k
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Answer: A: To obtain excel expression file
6.2 years ago by michael.ante ★ 3.8k
2
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1
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1.0k
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Answer: A: two genes within same genomic region
6.2 years ago by michael.ante ★ 3.8k
1
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1.0k
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Answer: A: How to present mapping result ?
6.2 years ago by michael.ante ★ 3.8k
0
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0
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2.0k
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Answer: A: Extract random number of transcript and exons from gencode annotation
6.2 years ago by michael.ante ★ 3.8k
0
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0
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2.1k
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Answer: A: GENCODE v.27 BED 12 file
6.3 years ago by michael.ante ★ 3.8k
2
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0
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939
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Answer: A: estimate error profile from aligned Illumina reads
6.3 years ago by michael.ante ★ 3.8k
2
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0
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1.5k
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Answer: A: bowtie2 messes up headers with sequences in output
6.4 years ago by michael.ante ★ 3.8k
0
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0
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9.3k
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Answer: A: Extract Reads In Fastq Using A Bed File.
6.4 years ago by michael.ante ★ 3.8k
7
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1
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13k
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Answer: A: htseq-count output file
6.4 years ago by michael.ante ★ 3.8k
0
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2
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3.6k
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Answer: A: Converting .bam file to .fasta file from a genic region
6.4 years ago by michael.ante ★ 3.8k
2
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1
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1.5k
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Answer: C: Paralellize samtools piped with awk
6.4 years ago by michael.ante ★ 3.8k
3
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1
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4.6k
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Answer: A: Grepping from a specific column with pattern list
6.4 years ago by michael.ante ★ 3.8k
2
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1
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1.0k
views
Answer: C: Fetching Ribosomal protein sequences of Saccharomyces cerevisiae and E. Coli
6.4 years ago by michael.ante ★ 3.8k
0
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1
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4.5k
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Answer: A: trimming PE RNA Reads
6.5 years ago by michael.ante ★ 3.8k
2
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1
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1.9k
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Answer: A: STAR aligner concordant read
6.5 years ago by michael.ante ★ 3.8k
1
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0
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5.8k
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Answer: A: Plotting TSS & TTS for Chip-seq peaks
6.5 years ago by michael.ante ★ 3.8k
2
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1
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2.3k
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Answer: A: Bedtools map to generate a new bedgraph
6.5 years ago by michael.ante ★ 3.8k
2
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0
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10k
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Answer: A: rRNA detection (for contamination) in RNA-seq
6.5 years ago by michael.ante ★ 3.8k
1
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0
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2.8k
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Answer: A: Alternative for GeneBody coverage from RseQC (Python) in R
7.0 years ago by michael.ante ★ 3.8k
2
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0
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12k
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Answer: A: Extract specific reads from FASTQ files based on subsequence
updated 7.2 years ago by 43k • written 9.0 years ago by ★ 3.8k
3
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0
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5.0k
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Answer: A: Calculate forward and reverse strand reads from bam
7.3 years ago by michael.ante ★ 3.8k
1
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0
replies
2.1k
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Answer: A: plot coverage for WES data
7.3 years ago by michael.ante ★ 3.8k
2
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1
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5.2k
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Answer: C: RPKM and FPKM directly comparable?
7.3 years ago by michael.ante ★ 3.8k
1
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1
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1.2k
views
Answer: A: Summarizing the Results in R
7.4 years ago by michael.ante ★ 3.8k
1
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1
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3.9k
views
Answer: A: How to merge column text files using terminal command?
7.4 years ago by michael.ante ★ 3.8k
0
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2
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2.5k
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Answer: A: How to print 2 lines if first has "*" in it
7.4 years ago by michael.ante ★ 3.8k
3
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1
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1.6k
views
Answer: A: Dear frineds, i wanna ask how can i know the mismatch from bowtie2 output
7.4 years ago by michael.ante ★ 3.8k
0
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0
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2.4k
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Answer: A: High number of no feature while using htseq-count on Tophat2 aligned as well as
7.4 years ago by michael.ante ★ 3.8k
3
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0
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13k
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Answer: A: FASTA sequence sorting based on the header
7.4 years ago by michael.ante ★ 3.8k
1
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0
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2.0k
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Answer: A: Check my work? Hyper geometric test on enrichment between iCLIP sites across exp
7.4 years ago by michael.ante ★ 3.8k
0
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0
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2.0k
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Answer: A: GFF/GTF for small ncRNAs
7.4 years ago by michael.ante ★ 3.8k
1
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0
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4.9k
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Answer: A: htseq counts on genes (introns + exons)
7.5 years ago by michael.ante ★ 3.8k
0
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2
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1.1k
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Answer: A: The meaning of SCRIPTURE output file, *.segments
7.5 years ago by michael.ante ★ 3.8k
2
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0
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1.8k
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Answer: A: tab-delimited file - use in bedtools?
7.5 years ago by michael.ante ★ 3.8k
1
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1
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1.9k
views
Answer: A: Disadvantages Eukaryotes rna seq pipeline about bacteria
7.5 years ago by michael.ante ★ 3.8k
163 results • Page 2 of 4
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