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Answer: A: HTSeq error when reading BAM file
7.6 years ago by michael.ante ★ 3.8k
1
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0
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7.0k
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Answer: A: Where can I find a small NGS raw data set?
7.7 years ago by michael.ante ★ 3.8k
0
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0
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3.8k
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Answer: A: Use Bedtools to extract stranded read depth from BAM files
7.7 years ago by michael.ante ★ 3.8k
1
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1
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5.5k
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Answer: A: Cufflinks- found spliced alignment without XS attribute
7.7 years ago by michael.ante ★ 3.8k
0
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1
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4.3k
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Answer: A: Extract intergenic coordinate from gff
7.8 years ago by michael.ante ★ 3.8k
1
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0
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7.2k
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Answer: A: Run htseq-count with multiple sam files?
7.9 years ago by michael.ante ★ 3.8k
1
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1
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5.2k
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Answer: A: High number of no feature while using htseq-count on Tophat2 aligned as well as
7.9 years ago by michael.ante ★ 3.8k
1
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1
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5.2k
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Answer: A: High number of no feature while using htseq-count on Tophat2 aligned as well as
7.9 years ago by michael.ante ★ 3.8k
1
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1
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1.8k
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Answer: A: Generate bed co-ordinates other then given inout bed file
8.0 years ago by michael.ante ★ 3.8k
3
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1
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5.2k
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Answer: A: Improving alignment rates for RNA-seq
8.0 years ago by michael.ante ★ 3.8k
3
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1
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3.6k
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Answer: A: HTSeq with transcriptome alignment- finding the right gtf
8.0 years ago by michael.ante ★ 3.8k
0
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1
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2.4k
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Answer: A: problem with using gtf file in cufflinks in Galaxy
8.0 years ago by michael.ante ★ 3.8k
1
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0
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2.1k
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Answer: A: bed file conversion and comparing with the genome to find its region
8.0 years ago by michael.ante ★ 3.8k
0
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1
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1.3k
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Answer: A: raw data origine
8.0 years ago by michael.ante ★ 3.8k
1
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0
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6.6k
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Answer: A: calculate FPKM/RPKM values by user friendly software
8.0 years ago by michael.ante ★ 3.8k
2
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1
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8.0k
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Answer: A: Extracting last N bases of reads in FASTQ file
8.0 years ago by michael.ante ★ 3.8k
3
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1
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11k
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Answer: A: How can we extract these genes from VCF file?
8.0 years ago by michael.ante ★ 3.8k
2
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0
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3.1k
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Answer: A: How to extract upper/lowercase from fasta to output position and +/-
8.0 years ago by michael.ante ★ 3.8k
1
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0
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1.8k
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Answer: A: Where to find Bioinformatics datasets for the purpose of visualization
8.1 years ago by michael.ante ★ 3.8k
1
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1
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6.2k
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Answer: A: rename reads in fastq files
8.1 years ago by michael.ante ★ 3.8k
4
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0
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2.4k
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Answer: A: Incompatibility between bbmap and htseq?
8.1 years ago by michael.ante ★ 3.8k
0
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0
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1.9k
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Answer: A: whole genome fasta/gtf for cell lines
8.1 years ago by michael.ante ★ 3.8k
1
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0
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2.4k
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Answer: A: bam-readcount empty output
8.1 years ago by michael.ante ★ 3.8k
5
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0
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7.0k
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Answer: A: How to convert my text file to GTF, GFF3 or BED file.
8.1 years ago by michael.ante ★ 3.8k
1
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1
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3.0k
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Answer: A: Re-naming just part of header in fasta file
8.1 years ago by michael.ante ★ 3.8k
3
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1
reply
5.5k
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Answer: A: Mapping to the transcriptome using Bowtie - am I doing it right?
8.2 years ago by michael.ante ★ 3.8k
2
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1
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2.3k
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Answer: A: gold standard mRNA differential expression
8.2 years ago by michael.ante ★ 3.8k
0
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0
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2.6k
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Answer: A: Interpreting bed file...
8.2 years ago by michael.ante ★ 3.8k
1
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1
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1.8k
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Answer: A: Other RNA removal from RNA-Seq Data
8.2 years ago by michael.ante ★ 3.8k
0
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1
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3.2k
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Answer: A: dexseq_count.py gives zero counts for any exon
8.2 years ago by michael.ante ★ 3.8k
0
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0
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2.4k
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Answer: A: Convertion to gff3 format
8.4 years ago by michael.ante ★ 3.8k
2
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1
reply
7.6k
views
Answer: A: How to remove illumina PCR primer 2.01 from RNA-seq samples
8.4 years ago by michael.ante ★ 3.8k
2
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0
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1.3k
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Answer: A: Question about figure interpretation
8.5 years ago by michael.ante ★ 3.8k
0
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0
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2.3k
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Answer: A: filtering bam file
8.5 years ago by michael.ante ★ 3.8k
1
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1
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4.9k
views
Answer: A: How to find duplicate values in two columns and move them to a third?
8.6 years ago by michael.ante ★ 3.8k
1
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1
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2.9k
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Answer: A: Blast Tabular to XML
8.6 years ago by michael.ante ★ 3.8k
0
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1
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3.0k
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Answer: A: To know % of reads matching rRNA genes in my sample
8.6 years ago by michael.ante ★ 3.8k
1
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0
replies
2.6k
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Answer: Answer: How to generate a microarray data set with paired samples?
updated 19 months ago by 43k • written 8.6 years ago by ★ 3.8k
0
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2
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2.3k
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Answer: Answer: Subsetting fasta files based on blast results
updated 21 months ago by 43k • written 8.6 years ago by ★ 3.8k
2
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1
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13k
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Answer: Answer: How to delete seq_id + sequence from FASTA file matching specific seq_id
updated 19 months ago by 43k • written 8.6 years ago by ★ 3.8k
4
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1
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6.0k
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Answer: Answer: htseq-count overcounting non-unique alignments
updated 19 months ago by 43k • written 8.6 years ago by ★ 3.8k
1
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1
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1.8k
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Answer: A: Calculate Number of Reads per class code (cufflinks)
8.7 years ago by michael.ante ★ 3.8k
0
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1
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3.5k
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Answer: A: Converting a list of different gene names to a common name in order to retrieve
8.7 years ago by michael.ante ★ 3.8k
0
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0
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1.7k
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Answer: Answer: Remove redundant name in a list
updated 18 months ago by 43k • written 8.7 years ago by ★ 3.8k
2
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1
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11k
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Answer: Answer: Merge a bed file to generate non-overlapping entries!
updated 18 months ago by 43k • written 8.7 years ago by ★ 3.8k
1
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1
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6.0k
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Answer: Answer: STAR crashing due to "FATAL ERROR: Read1 and Read2 are not consistent"
updated 18 months ago by 43k • written 8.8 years ago by ★ 3.8k
0
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1
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7.9k
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Answer: Answer: Filtering nth length from mapped SAM/BAM file.
updated 18 months ago by 43k • written 8.8 years ago by ★ 3.8k
4
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1
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2.6k
views
Answer: Answer: Metabolic Interaction Network analysis
updated 18 months ago by 43k • written 8.8 years ago by ★ 3.8k
1
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0
replies
2.6k
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Answer: Answer: Trimming Illumina TrueSeq adapters
updated 17 months ago by 43k • written 8.8 years ago by ★ 3.8k
0
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2
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4.3k
views
Answer: Answer: extracting Gene ID from Genbank accession numbers in blast tabular file
updated 18 months ago by 43k • written 8.8 years ago by ★ 3.8k
163 results • Page 3 of 4
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