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Comment: C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
5.5 years ago by michael.ante ★ 3.8k
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1.6k
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Comment: C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
5.5 years ago by michael.ante ★ 3.8k
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1.4k
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Answer: A: Extract sequence ID from Fasta for a given sequence
5.5 years ago by michael.ante ★ 3.8k
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8.8k
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Comment: C: gff3 to bed12
5.6 years ago by michael.ante ★ 3.8k
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8.8k
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Comment: C: gff3 to bed12
5.6 years ago by michael.ante ★ 3.8k
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2
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8.8k
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Comment: C: gff3 to bed12
5.6 years ago by michael.ante ★ 3.8k
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8.8k
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Comment: C: gff3 to bed12
5.6 years ago by michael.ante ★ 3.8k
1
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8.8k
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Comment: C: gff3 to bed12
5.6 years ago by michael.ante ★ 3.8k
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7.5k
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Comment: C: i cant sort bed file. Error in bedtools merge.
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.8k
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Answer: A: Aligning reads to genome together with transcriptome
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.8k
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1
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7.8k
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Comment: C: RPKM to FPKM conversion
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.8k
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1
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7.8k
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Answer: A: RPKM to FPKM conversion
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.8k
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2.6k
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Comment: C: Good mean coverage but big std in coverage
5.6 years ago by michael.ante ★ 3.8k
2
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2.6k
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Answer: A: Good mean coverage but big std in coverage
5.6 years ago by michael.ante ★ 3.8k
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2.1k
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Comment: C: bedtools intersect issue
5.6 years ago by michael.ante ★ 3.8k
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0
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5.6k
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Answer: A: Post Your Prefered Bioinformatics Short Code
updated 5.7 years ago by 43k • written 9.0 years ago by ★ 3.8k
3
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1
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1.5k
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Answer: A: Extracting the sequence of isoforms from RNA-seq data
5.7 years ago by michael.ante ★ 3.8k
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0
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1.8k
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Comment: C: Using HTseq-count for Pseudomonas Aeruginosa data
5.7 years ago by michael.ante ★ 3.8k
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0
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2.0k
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Comment: C: RNA-seq : Quantification problem after mapped with BBMap
5.7 years ago by michael.ante ★ 3.8k
1
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0
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1.8k
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Comment: C: Using HTseq-count for Pseudomonas Aeruginosa data
5.7 years ago by michael.ante ★ 3.8k
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1
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5.9k
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Comment: C: Convert gff3 to gtf with R or shell
5.7 years ago by michael.ante ★ 3.8k
2
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1
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3.7k
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Answer: A: Counting reads aligned to forward or reverse strand
5.7 years ago by michael.ante ★ 3.8k
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3.4k
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Answer: A: comparing two files and adding columns of one file to another file if a fields i
5.8 years ago by michael.ante ★ 3.8k
1
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0
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3.7k
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Answer: A: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for w
5.8 years ago by michael.ante ★ 3.8k
1
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1
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2.0k
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Answer: A: RNA-seq : Quantification problem after mapped with BBMap
5.8 years ago by michael.ante ★ 3.8k
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0
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1.6k
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Answer: A: Create an assembly with a ribosomic chromosome
5.8 years ago by michael.ante ★ 3.8k
1
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1
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7.1k
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Comment: C: Building STAR genome index continually killed
5.8 years ago by michael.ante ★ 3.8k
1
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1
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2.1k
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Answer: A: featureCounts problem annotation
5.8 years ago by michael.ante ★ 3.8k
1
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0
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2.1k
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Answer: A: FastX toolkit - problems with Collapser
5.8 years ago by michael.ante ★ 3.8k
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1
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1.9k
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Answer: A: get the intergenic regions anf its strain.
5.9 years ago by michael.ante ★ 3.8k
2
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1
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2.4k
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Answer: C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
5.9 years ago by michael.ante ★ 3.8k
1
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0
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2.8k
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Comment: C: HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R]
5.9 years ago by michael.ante ★ 3.8k
0
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0
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2.8k
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Comment: C: cufflink output FPKM values
6.0 years ago by michael.ante ★ 3.8k
1
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1
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2.8k
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Answer: A: cufflink output FPKM values
6.0 years ago by michael.ante ★ 3.8k
2
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2
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4.0k
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Comment: C: Using multiple gff files for featureCounts tool
6.0 years ago by michael.ante ★ 3.8k
0
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0
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1.1k
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Comment: C: More efficient way than zipping arrays for transposing a FinalReport table in Py
6.0 years ago by michael.ante ★ 3.8k
1
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1
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6.3k
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Comment: C: High Unassigned Ambiguity in Feature Counts
6.0 years ago by michael.ante ★ 3.8k
3
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1
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6.3k
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Answer: A: High Unassigned Ambiguity in Feature Counts
6.0 years ago by michael.ante ★ 3.8k
1
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1
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1.4k
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Answer: A: match gives me all NA in annotating my genes
6.1 years ago by michael.ante ★ 3.8k
0
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1
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5.3k
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Comment: C: samtools - Finding Average Fragment size for pair?
6.1 years ago by michael.ante ★ 3.8k
4
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1
reply
2.0k
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Answer: C: HISAT output SAM file incorrect (only contains 3 columns of data)
6.1 years ago by michael.ante ★ 3.8k
1
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1
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5.3k
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Answer: A: samtools - Finding Average Fragment size for pair?
6.1 years ago by michael.ante ★ 3.8k
1
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0
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2.1k
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Comment: C: Fastq_quality_filter: found invalid nucleotide sequence
6.1 years ago by michael.ante ★ 3.8k
1
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0
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3.0k
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Answer: A: Genomic coordinates for transcripts
6.1 years ago by michael.ante ★ 3.8k
0
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0
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937
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Comment: C: Testing data for read mapping tool
6.1 years ago by michael.ante ★ 3.8k
1
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1
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11k
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Comment: C: How to overcome "duplicate row.names" error while importing tpm/count/fpkm matri
6.2 years ago by michael.ante ★ 3.8k
2
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0
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2.7k
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Answer: A: FastQC results with abnormal GC content and Overrepresented sequences in RIP-seq
6.2 years ago by michael.ante ★ 3.8k
0
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1
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937
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Answer: A: Testing data for read mapping tool
6.2 years ago by michael.ante ★ 3.8k
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0
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1.5k
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Comment: C: Creating pathway diagrams from xml file
6.2 years ago by michael.ante ★ 3.8k
0
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1
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1.5k
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Comment: C: Creating pathway diagrams from xml file
6.2 years ago by michael.ante ★ 3.8k
412 results • Page 4 of 9
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