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1.6k
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Comment:
C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
5.6 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
1.6k
views
Comment:
C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
5.6 years ago by
michael.ante
★ 3.8k
2
votes
0
replies
1.4k
views
Answer:
A: Extract sequence ID from Fasta for a given sequence
5.6 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
8.8k
views
Comment:
C: gff3 to bed12
5.6 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
8.8k
views
Comment:
C: gff3 to bed12
5.6 years ago by
michael.ante
★ 3.8k
0
votes
2
replies
8.8k
views
Comment:
C: gff3 to bed12
5.6 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
8.8k
views
Comment:
C: gff3 to bed12
5.6 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
8.8k
views
Comment:
C: gff3 to bed12
5.6 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
7.5k
views
Comment:
C: i cant sort bed file. Error in bedtools merge.
updated 5.7 years ago by
Ram
44k • written 8.3 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
3.0k
views
Answer:
A: Aligning reads to genome together with transcriptome
updated 5.7 years ago by
Ram
44k • written 8.3 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
7.8k
views
Comment:
C: RPKM to FPKM conversion
updated 5.7 years ago by
Ram
44k • written 8.2 years ago by
michael.ante
★ 3.8k
2
votes
1
reply
7.8k
views
Answer:
A: RPKM to FPKM conversion
updated 5.7 years ago by
Ram
44k • written 8.2 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
2.7k
views
Comment:
C: Good mean coverage but big std in coverage
5.7 years ago by
michael.ante
★ 3.8k
2
votes
0
replies
2.7k
views
Answer:
A: Good mean coverage but big std in coverage
5.7 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
2.1k
views
Comment:
C: bedtools intersect issue
5.7 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
5.7k
views
Answer:
A: Post Your Prefered Bioinformatics Short Code
updated 5.7 years ago by
Ram
44k • written 9.1 years ago by
michael.ante
★ 3.8k
3
votes
1
reply
1.6k
views
Answer:
A: Extracting the sequence of isoforms from RNA-seq data
5.8 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.8k
views
Comment:
C: Using HTseq-count for Pseudomonas Aeruginosa data
5.8 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
2.1k
views
Comment:
C: RNA-seq : Quantification problem after mapped with BBMap
5.8 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
1.8k
views
Comment:
C: Using HTseq-count for Pseudomonas Aeruginosa data
5.8 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
5.9k
views
Comment:
C: Convert gff3 to gtf with R or shell
5.8 years ago by
michael.ante
★ 3.8k
2
votes
1
reply
3.8k
views
Answer:
A: Counting reads aligned to forward or reverse strand
5.8 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
3.4k
views
Answer:
A: comparing two files and adding columns of one file to another file if a fields i
5.8 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
3.7k
views
Answer:
A: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for w
5.8 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
2.1k
views
Answer:
A: RNA-seq : Quantification problem after mapped with BBMap
5.8 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.6k
views
Answer:
A: Create an assembly with a ribosomic chromosome
5.8 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
7.1k
views
Comment:
C: Building STAR genome index continually killed
5.9 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
2.1k
views
Answer:
A: featureCounts problem annotation
5.9 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
2.1k
views
Answer:
A: FastX toolkit - problems with Collapser
5.9 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.9k
views
Answer:
A: get the intergenic regions anf its strain.
5.9 years ago by
michael.ante
★ 3.8k
2
votes
1
reply
2.5k
views
Answer:
C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
5.9 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
2.8k
views
Comment:
C: HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R]
6.0 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
2.9k
views
Comment:
C: cufflink output FPKM values
6.0 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
2.9k
views
Answer:
A: cufflink output FPKM values
6.0 years ago by
michael.ante
★ 3.8k
2
votes
2
replies
4.0k
views
Comment:
C: Using multiple gff files for featureCounts tool
6.0 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.1k
views
Comment:
C: More efficient way than zipping arrays for transposing a FinalReport table in Py
6.1 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
6.4k
views
Comment:
C: High Unassigned Ambiguity in Feature Counts
6.1 years ago by
michael.ante
★ 3.8k
3
votes
1
reply
6.4k
views
Answer:
A: High Unassigned Ambiguity in Feature Counts
6.1 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
1.4k
views
Answer:
A: match gives me all NA in annotating my genes
6.2 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
5.4k
views
Comment:
C: samtools - Finding Average Fragment size for pair?
6.2 years ago by
michael.ante
★ 3.8k
4
votes
1
reply
2.0k
views
Answer:
C: HISAT output SAM file incorrect (only contains 3 columns of data)
6.2 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
5.4k
views
Answer:
A: samtools - Finding Average Fragment size for pair?
6.2 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
2.1k
views
Comment:
C: Fastq_quality_filter: found invalid nucleotide sequence
6.2 years ago by
michael.ante
★ 3.8k
1
vote
0
replies
3.0k
views
Answer:
A: Genomic coordinates for transcripts
6.2 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
943
views
Comment:
C: Testing data for read mapping tool
6.2 years ago by
michael.ante
★ 3.8k
1
vote
1
reply
11k
views
Comment:
C: How to overcome "duplicate row.names" error while importing tpm/count/fpkm matri
6.2 years ago by
michael.ante
★ 3.8k
2
votes
0
replies
2.8k
views
Answer:
A: FastQC results with abnormal GC content and Overrepresented sequences in RIP-seq
6.2 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
943
views
Answer:
A: Testing data for read mapping tool
6.2 years ago by
michael.ante
★ 3.8k
0
votes
0
replies
1.6k
views
Comment:
C: Creating pathway diagrams from xml file
6.2 years ago by
michael.ante
★ 3.8k
0
votes
1
reply
1.6k
views
Comment:
C: Creating pathway diagrams from xml file
6.2 years ago by
michael.ante
★ 3.8k
412 results • Page
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