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Comment: Comment: Bowtie2 Alignment summary
updated 3.1 years ago by 45k • written 10.1 years ago by ★ 3.0k
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0
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3.2k
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Comment: C: What is nucleotide substitution rate (of aligned sequences)?
10.1 years ago by thackl ★ 3.0k
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3.2k
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Answer: Answer: What is nucleotide substitution rate (of aligned sequences)?
updated 3.1 years ago by 45k • written 10.1 years ago by ★ 3.0k
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1
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14k
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Answer: A: Bowtie2 Alignment summary
10.1 years ago by thackl ★ 3.0k
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1
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2.9k
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Answer: A: What Quality Control software should i use?
10.2 years ago by thackl ★ 3.0k
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0
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11k
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Comment: C: How do I compute the effective genome size?
10.2 years ago by thackl ★ 3.0k
3
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2
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11k
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Answer: A: How do I compute the effective genome size?
10.2 years ago by thackl ★ 3.0k
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0
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3.1k
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Comment: Comment: error when using sickle for quality trimming
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 3.0k
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1
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12k
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Comment: C: How to generate contigs from bam alignment
10.2 years ago by thackl ★ 3.0k
1
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1
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12k
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Comment: C: How to generate contigs from bam alignment
10.2 years ago by thackl ★ 3.0k
2
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3
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12k
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Answer: A: How to generate contigs from bam alignment
10.2 years ago by thackl ★ 3.0k
0
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2
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12k
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Comment: Comment: How to generate contigs from bam alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 3.0k
1
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0
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17k
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Answer: A: How Does Assembled Contigs Get Mapped To A Chromosome?
10.2 years ago by thackl ★ 3.0k
0
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1
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12k
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Comment: Comment: How to generate contigs from bam alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 3.0k
1
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1
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12k
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Answer: Answer: How to generate contigs from bam alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 3.0k
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0
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5.8k
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Answer: Answer: How To Adjust Bwa Mem To Allow For Longer Gaps In Contig Alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 3.0k
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0
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4.2k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
10.2 years ago by thackl ★ 3.0k
0
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1
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4.2k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
10.2 years ago by thackl ★ 3.0k
0
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1
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4.2k
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Comment: Comment: What does it mean that: 100% of my alignment are discordant?
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 3.0k
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0
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10k
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Comment: C: Randomize order of sequences in a fasta file
10.2 years ago by thackl ★ 3.0k
0
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1
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10k
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Comment: C: Randomize order of sequences in a fasta file
10.2 years ago by thackl ★ 3.0k
2
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1
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10k
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Answer: Answer: Randomize order of sequences in a fasta file
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 3.0k
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1
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3.6k
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Answer: A: unalign bam and convert to fastq
10.2 years ago by thackl ★ 3.0k
0
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0
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5.8k
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Comment: C: Blastn doesn't allow certain gap penalties?
10.3 years ago by thackl ★ 3.0k
0
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1
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11k
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Comment: C: Jellyfish -C option explanation
10.3 years ago by thackl ★ 3.0k
1
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1
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11k
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Comment: Comment: Jellyfish -C option explanation
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
1
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1
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11k
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Comment: Comment: Jellyfish -C option explanation
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
1
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1
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2.9k
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Comment: C: Transposons and Pacbio
10.3 years ago by thackl ★ 3.0k
3
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1
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4.6k
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Answer: Answer: Perl : String comparison problem
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
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1
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4.6k
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Comment: Comment: Perl : String comparison problem
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
1
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1
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4.6k
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Comment: Comment: Perl : String comparison problem
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
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0
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3.0k
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Comment: C: Question about SAMTOOLS command
10.3 years ago by thackl ★ 3.0k
1
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1
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3.0k
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Comment: Comment: Question about SAMTOOLS command
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
2
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0
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3.2k
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Comment: C: Number of Blast hits for multiple sequence fasta
10.3 years ago by thackl ★ 3.0k
0
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1
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4.1k
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Comment: C: Assemble short reads based on k-mers
10.3 years ago by thackl ★ 3.0k
0
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1
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4.1k
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Comment: C: Assemble short reads based on k-mers
10.3 years ago by thackl ★ 3.0k
0
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1
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4.1k
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Comment: C: Assemble short reads based on k-mers
10.3 years ago by thackl ★ 3.0k
0
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1
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4.1k
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Answer: A: Assemble short reads based on k-mers
10.3 years ago by thackl ★ 3.0k
0
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1
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4.1k
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Comment: C: bowtie options for exact match with reference short sequence
10.3 years ago by thackl ★ 3.0k
0
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1
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4.0k
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Comment: Comment: Mapping shorts reads using Bowtie
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
0
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1
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4.0k
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Comment: Comment: Mapping shorts reads using Bowtie
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 3.0k
2
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0
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3.7k
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Answer: Answer: Cases where indexing is efficient for read retrieval
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 3.0k
1
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0
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8.1k
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Comment: Comment: How to align DNA reads against a database of protein references
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 3.0k
3
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1
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5.3k
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Answer: A: perl count fasta sequences
10.3 years ago by thackl ★ 3.0k
2
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1
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4.2k
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Answer: A: Maximum allowed (mismatches) SNPs/INDELs in one read in Bowtie2 alignment
10.3 years ago by thackl ★ 3.0k
0
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1
reply
8.1k
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Answer: A: How to align DNA reads against a database of protein references
10.3 years ago by thackl ★ 3.0k
0
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0
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3.1k
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Comment: C: Which Flash output file do you use in Soap denovo assembly
10.3 years ago by thackl ★ 3.0k
1
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1
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3.1k
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Answer: A: Which Flash output file do you use in Soap denovo assembly
10.3 years ago by thackl ★ 3.0k
4
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0
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5.5k
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Answer: Answer: fastq to fasta perl
updated 3.7 years ago by 45k • written 10.3 years ago by ★ 3.0k
0
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0
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6.6k
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Answer: A: view of a circular viral genome and its annotation
10.4 years ago by thackl ★ 3.0k
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