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11k
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Comment:
C: All the reads aligned using STAR have low mapping quality (0-3). What is happeni
7.8 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
11k
views
Comment:
C: All the reads aligned using STAR have low mapping quality (0-3). What is happeni
7.8 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
11k
views
Comment:
C: All the reads aligned using STAR have low mapping quality (0-3). What is happeni
7.8 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
11k
views
Comment:
C: All the reads aligned using STAR have low mapping quality (0-3). What is happeni
7.8 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
2.4k
views
Comment:
C: Allele specific expression (ASE) using TPM (transcripts per million) values
updated 7.9 years ago by
GouthamAtla
12k • written 7.9 years ago by
kirannbishwa01
★ 1.6k
1
vote
2
replies
5.9k
views
Comment:
C: Pysam is giving - ValueError: reference_id -1 out of range 0<=tid<65334. Any su
7.9 years ago by
kirannbishwa01
★ 1.6k
1
vote
1
reply
5.9k
views
Comment:
C: Pysam is giving - ValueError: reference_id -1 out of range 0<=tid<65334. Any su
7.9 years ago by
kirannbishwa01
★ 1.6k
0
votes
2
replies
5.9k
views
Comment:
C: Pysam is giving - ValueError: reference_id -1 out of range 0<=tid<65334. Any su
7.9 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
5.9k
views
Comment:
C: Pysam is giving - ValueError: reference_id -1 out of range 0<=tid<65334. Any su
7.9 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
15k
views
Comment:
C: STAR genome index with and/or with out *.gtf annotation
8.0 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
2.9k
views
Comment:
C: Haplotype phasing for non-human model organism
8.0 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
4.9k
views
Comment:
C: Which reference panel to use with Impute2
8.0 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
2.6k
views
Comment:
C: VCF isnot compressed and indexed even after running bgzip and tabix,
8.0 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
2.6k
views
Comment:
C: VCF isnot compressed and indexed even after running bgzip and tabix,
8.0 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
11k
views
Comment:
C: Why GATK and bcftools SNP calling different?
8.1 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.1k
views
Comment:
C: Calculate AB (allele balance) using SnpEff/SnpSift
8.1 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
3.1k
views
Comment:
C: Calculate AB (allele balance) using SnpEff/SnpSift
8.1 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.1k
views
Comment:
A: Calculate AB (allele balance) using SnpEff/SnpSift
8.1 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
4.1k
views
Comment:
C: Extract heterozygous genotype (GT: 0/1 and 1/2) from the vcf file and calculate
8.1 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
4.1k
views
Comment:
C: Extract heterozygous genotype (GT: 0/1 and 1/2) from the vcf file and calculate
8.1 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
4.1k
views
Comment:
C: Extract heterozygous genotype (GT: 0/1 and 1/2) from the vcf file and calculate
8.1 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.1k
views
Comment:
C: Problem running IGB on linux
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.1k
views
Comment:
Comment: Problem running IGB on linux
updated 21 months ago by
Ram
43k • written 8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.1k
views
Comment:
C: Problem running IGB on linux
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
3.1k
views
Comment:
C: Problem running IGB on linux
8.2 years ago by
kirannbishwa01
★ 1.6k
1
vote
1
reply
3.8k
views
Comment:
C: Errors in sam file after bwa SAMPE alignment.
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
3.8k
views
Comment:
C: Errors in sam file after bwa SAMPE alignment.
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.6k
views
Comment:
C: error while using picard 2.1.0
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
3.8k
views
Comment:
C: Errors in sam file after bwa SAMPE alignment.
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
2.1k
views
Comment:
C: Handling/Extracting genome matrix file
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
2.1k
views
Comment:
C: Handling/Extracting genome matrix file
8.2 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
5.6k
views
Comment:
C: Extracting annotation values from vcf files for plotting distribution
8.3 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.7k
views
Comment:
Comment: How to remove kmer profiles?
updated 20 months ago by
Ram
43k • written 8.6 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.7k
views
Comment:
C: How to remove kmer profiles?
8.6 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
3.7k
views
Comment:
Comment: How to remove kmer profiles?
updated 20 months ago by
Ram
43k • written 8.6 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
3.7k
views
Comment:
Comment: How to remove kmer profiles?
updated 20 months ago by
Ram
43k • written 8.6 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
5.3k
views
Comment:
Comment: Changing @RG header information in *.bam files using picard
updated 19 months ago by
Ram
43k • written 8.6 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
5.2k
views
Comment:
C: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
8.8 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
5.2k
views
Comment:
C: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
8.9 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
5.2k
views
Comment:
Comment: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
updated 16 months ago by
Ram
43k • written 8.9 years ago by
kirannbishwa01
★ 1.6k
0
votes
0
replies
2.0k
views
Comment:
Comment: Quality check for genomic reseq data and aligment to reference genome
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
kirannbishwa01
★ 1.6k
141 results • Page
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