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14
votes
3
replies
20k
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Tutorial: Plotting the coverage and depth (Y-axis) statistics of a bam file along the genome (X-axis), using Samtools, awk and R.
genome plot coverage samtools
updated 11 months ago by ▴ 40 • written 7.3 years ago by ★ 1.6k
0
votes
4
replies
9.8k
views
How to force merge a VCF files, for different samples?
vcf merge SNP genome
written 7.1 years ago by ★ 1.6k
4
votes
2
replies
6.0k
views
Calculate Allele balance by sample
Allele balance SNP RNA-Seq
updated 3.5 years ago by ▴ 130 • written 8.4 years ago by ★ 1.6k
0
votes
0
replies
5.4k
views
Comment: C: Changing @RG header information in *.bam files using picard
updated 4.6 years ago by 44k • written 8.5 years ago by ★ 1.6k
1
vote
1
reply
2.9k
views
Comment: C: Segmentation fault error while running extractPIRs from ShapeIT
4.9 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
4.2k
views
Comment: C: VCF-simplify: a VCF simplification tool.
4.9 years ago by kirannbishwa01 ★ 1.6k
1
vote
1
reply
4.2k
views
Answer: A: VCF-simplify: a VCF simplification tool.
4.9 years ago by kirannbishwa01 ★ 1.6k
7
votes
9
replies
4.2k
views
6 follow
Tool: VCF-simplify: a VCF simplification tool.
VCF variants genome
updated 13 months ago by 44k • written 6.3 years ago by ★ 1.6k
1
vote
1
reply
974
views
Synonym gene names have some ambiguity. Is it a curation issue or something biological?
gene gene curation NCBI Ensembl
updated 5.9 years ago by 11k • written 6.4 years ago by ★ 1.6k
0
votes
1
reply
2.9k
views
How to prepare index/server for blat?
blat alignment index gfServer
updated 5.9 years ago by 44k • written 8.4 years ago by ★ 1.6k
1
vote
1
reply
12k
views
Comment: C: How to add custom fields to the VCF files?
5.9 years ago by kirannbishwa01 ★ 1.6k
8
votes
8
replies
12k
views
How to add custom fields to the VCF files?
vcf phasing SNP annotation manipulation
updated 5.9 years ago by ▴ 90 • written 7.9 years ago by ★ 1.6k
0
votes
0
replies
1.4k
views
Benchmarking datasets for Haplotype phasing
genome haplotype phasing shapeit NA12891
5.9 years ago by kirannbishwa01 ★ 1.6k
8
votes
8
replies
15k
views
STAR genome index with and/or with out *.gtf annotation
STAR gtf RNA-Seq alignment bowtie
updated 6.0 years ago by • 0 • written 8.2 years ago by ★ 1.6k
8
votes
8
replies
6.4k
views
Bam to fastq conversion is giving error?
bam fastq picard software error genome
updated 6.2 years ago by 20 • written 7.1 years ago by ★ 1.6k
0
votes
13
replies
2.9k
views
bcftools consensus not working when using -H flag
bcftools vcf software error reference genome
updated 6.2 years ago by 16k • written 6.2 years ago by ★ 1.6k
0
votes
0
replies
2.0k
views
GFF liftOver using CrossMap is failing.
software error Gff liftOver CrossMap
6.2 years ago by kirannbishwa01 ★ 1.6k
3
votes
1
reply
3.6k
views
Coverting missing sites to reference allele using Bcftools isn't working.
bcftools vcf software error genome genotype
updated 6.2 years ago by 16k • written 6.2 years ago by ★ 1.6k
0
votes
0
replies
2.9k
views
Comment: C: bcftools consensus not working when using -H flag
6.2 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
2.9k
views
Comment: C: bcftools consensus not working when using -H flag
6.2 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
2.9k
views
Comment: C: bcftools consensus not working when using -H flag
6.2 years ago by kirannbishwa01 ★ 1.6k
0
votes
2
replies
2.9k
views
Comment: C: bcftools consensus not working when using -H flag
6.2 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
2.9k
views
Comment: C: bcftools consensus not working when using -H flag
6.2 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
2.9k
views
Comment: C: bcftools consensus not working when using -H flag
6.2 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
2.5k
views
Answer: A: VCF file manipulation for extracting the required information
6.3 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
4.2k
views
Comment: C: VCF-simplify: a VCF simplification tool.
6.3 years ago by kirannbishwa01 ★ 1.6k
1
vote
0
replies
4.2k
views
Comment: C: VCF-simplify: a VCF simplification tool.
6.3 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
4.2k
views
Comment: C: VCF-simplify: a VCF simplification tool.
6.3 years ago by kirannbishwa01 ★ 1.6k
1
vote
1
reply
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
1
vote
0
replies
1.8k
views
Comment: C: What is the structure of the data in Haplotype reference panel?
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
2
replies
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
5.0k
views
Comment: C: Custom Reference panel creation for data imputation from .vcf files
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
5.0k
views
Comment: C: Custom Reference panel creation for data imputation from .vcf files
6.4 years ago by kirannbishwa01 ★ 1.6k
2
votes
2
replies
1.8k
views
What is the structure of the data in Haplotype reference panel?
genome haplotype reference panels variants
6.4 years ago by kirannbishwa01 ★ 1.6k
1
vote
1
reply
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
21k
views
Comment: C: bcftools merge of multiple vcf produces duplicate records. How to solve the issu
6.4 years ago by kirannbishwa01 ★ 1.6k
21
votes
18
replies
21k
views
bcftools merge of multiple vcf produces duplicate records. How to solve the issue.
VCF vcf merge bcftools duplicate records variants
updated 6.4 years ago by 88k • written 6.4 years ago by ★ 1.6k
1
vote
0
replies
6.5k
views
Answer: A: Multisample vcf to table
6.4 years ago by kirannbishwa01 ★ 1.6k
1
vote
0
replies
3.8k
views
Answer: A: VCF simplify INFO
6.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
1.3k
views
Tool: simplify the output of a vcf file using vcf_simplify-v1.py
vcf python variants
updated 13 months ago by 44k • written 6.4 years ago by ★ 1.6k
0
votes
0
replies
2.1k
views
Answer: A: Is this GT a mistake?
6.5 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
2.1k
views
Comment: C: Is this GT a mistake?
6.5 years ago by kirannbishwa01 ★ 1.6k
1
vote
1
reply
2.1k
views
Answer: A: Is this GT a mistake?
6.5 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
1.5k
views
Explanation of the markov chain in the given plot.
R python markov chain markov process plot
6.5 years ago by kirannbishwa01 ★ 1.6k
240 results • Page 1 of 5
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