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Comment: Comment: Match variants for allele frequency, LD score, and other features
17 months ago by Jautis ▴ 580
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1.1k
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Comment: Comment: bcftools mipileup error: format error, unexpected A at line 1
18 months ago by Jautis ▴ 580
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18k
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Comment: Comment: How to download dbSNP153 vcf files in hg19/GRCH37 version
2.5 years ago by Jautis ▴ 580
2
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1.3k
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Comment: Comment: Should I normalize the data before or after filtering to a particular cell type?
3.2 years ago by Jautis ▴ 580
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885
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Comment: Comment: Differntial Gene Expression analysis
3.2 years ago by Jautis ▴ 580
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1.0k
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Comment: Comment: SNPs with multiple nucleotides
3.2 years ago by Jautis ▴ 580
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1
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1.1k
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Comment: Comment: Capture Hi-C processing yields sparse matrices
3.2 years ago by Jautis ▴ 580
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1.3k
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Comment: Comment: Alternatives to TMM normalization
3.2 years ago by Jautis ▴ 580
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2.2k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
3.3 years ago by Jautis ▴ 580
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946
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Comment: Comment: Can I do differential analysis without phenodata?
3.3 years ago by Jautis ▴ 580
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2.2k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
3.3 years ago by Jautis ▴ 580
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0
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2.4k
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Comment: Comment: Merge two vcf's, keep only intersection of REF/ALT alleles
3.3 years ago by Jautis ▴ 580
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1.8k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
3.5 years ago by Jautis ▴ 580
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1
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1.8k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
3.5 years ago by Jautis ▴ 580
1
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0
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1.1k
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Comment: Comment: Finding a sequence
3.5 years ago by Jautis ▴ 580
1
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1
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6.1k
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Comment: Comment: fastqc html file
3.5 years ago by Jautis ▴ 580
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1
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5.4k
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Comment: Comment: multiqc could not generate results
3.5 years ago by Jautis ▴ 580
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1.2k
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Comment: Comment: Conserved regions in multiple fasta files (multiple species)?
3.5 years ago by Jautis ▴ 580
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6.1k
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Comment: Comment: fastqc html file
3.5 years ago by Jautis ▴ 580
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1.6k
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Comment: Comment: Bam file: replace low quality bases with "N"
3.6 years ago by Jautis ▴ 580
0
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1
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2.2k
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Comment: Comment: limma+voom flips the sign of the effect from CPM?
3.7 years ago by Jautis ▴ 580
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1
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2.6k
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Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
3.7 years ago by Jautis ▴ 580
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1
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2.6k
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Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
3.7 years ago by Jautis ▴ 580
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0
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3.1k
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Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
4.0 years ago by Jautis ▴ 580
1
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1
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3.1k
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Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
4.1 years ago by Jautis ▴ 580
0
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0
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1.3k
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Comment: Comment: Could someone help me check what genomic position is this variant nomenclature r
4.1 years ago by Jautis ▴ 580
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1
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4.0k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
4.1 years ago by Jautis ▴ 580
1
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0
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4.0k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
4.1 years ago by Jautis ▴ 580
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0
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2.4k
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Comment: Comment: Cannot color cells with 0 expression in certain color
4.1 years ago by Jautis ▴ 580
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0
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4.3k
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Comment: C: Calculating Tajima's D from SNP frequency data
4.3 years ago by Jautis ▴ 580
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0
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4.2k
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Comment: C: A strange R limma voom function mean-variance trend
4.3 years ago by Jautis ▴ 580
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0
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1.4k
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Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
4.9 years ago by Jautis ▴ 580
0
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1
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15k
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Comment: C: How to remove a list of reads from fastq file?
4.9 years ago by Jautis ▴ 580
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0
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3.3k
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Comment: C: sed (or similar) command to remove part of the FORMAT from a vcf file?
5.2 years ago by Jautis ▴ 580
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1
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16k
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Comment: C: How to combine chromosome vcf files
5.3 years ago by Jautis ▴ 580
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0
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2.9k
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Comment: C: Phylogenetic distance betwee species
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 580
2
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0
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4.9k
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Comment: C: Good Bioinformatics research papers
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 580
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1
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3.9k
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Comment: C: Taking genotypes out of a vcf file
updated 5.5 years ago by 45k • written 9.8 years ago by ▴ 580
0
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0
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14k
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Comment: C: Calculating the bisulfite conversion rate
updated 5.5 years ago by 45k • written 9.8 years ago by ▴ 580
0
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0
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2.2k
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Comment: C: vcftools minDP filter not working for samtools genotype calling output
5.6 years ago by Jautis ▴ 580
0
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2
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3.0k
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Comment: C: Error in transferring annotations to a new assembly using RATT
6.4 years ago by Jautis ▴ 580
0
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2
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3.0k
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Comment: C: Error in transferring annotations to a new assembly using RATT
6.4 years ago by Jautis ▴ 580
0
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0
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3.0k
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Comment: C: GOseq with non-supported organism
6.8 years ago by Jautis ▴ 580
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1
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1.8k
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Comment: C: Find chromosomal location of a scaffold
6.8 years ago by Jautis ▴ 580
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1
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1.8k
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Comment: C: Find chromosomal location of a scaffold
6.8 years ago by Jautis ▴ 580
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1
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4.1k
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Comment: C: Convert an altered sam file into a bam file
7.4 years ago by Jautis ▴ 580
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0
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1.4k
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Comment: C: Genotype calls for a list of variable sites
7.6 years ago by Jautis ▴ 580
1
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0
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8.1k
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Comment: C: Modifying fasta file based on vcf information
7.9 years ago by Jautis ▴ 580
0
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1
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2.1k
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Comment: C: Outputting DP4 flag in GATK
8.1 years ago by Jautis ▴ 580
0
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1
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2.0k
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Comment: C: Getting reads that end at a digest site from a sam/bam file
8.2 years ago by Jautis ▴ 580
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