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Comment: Comment: Match variants for allele frequency, LD score, and other features
5 months ago by Jautis ▴ 560
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572
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Comment: Comment: bcftools mipileup error: format error, unexpected A at line 1
5 months ago by Jautis ▴ 560
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14k
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Comment: Comment: How to download dbSNP153 vcf files in hg19/GRCH37 version
18 months ago by Jautis ▴ 560
2
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928
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Comment: Comment: Should I normalize the data before or after filtering to a particular cell type?
2.2 years ago by Jautis ▴ 560
4
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654
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Comment: Comment: Differntial Gene Expression analysis
2.2 years ago by Jautis ▴ 560
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667
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Comment: Comment: SNPs with multiple nucleotides
2.2 years ago by Jautis ▴ 560
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628
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Comment: Comment: Capture Hi-C processing yields sparse matrices
2.2 years ago by Jautis ▴ 560
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863
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Comment: Comment: Alternatives to TMM normalization
2.2 years ago by Jautis ▴ 560
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1.5k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
2.3 years ago by Jautis ▴ 560
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673
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Comment: Comment: Can I do differential analysis without phenodata?
2.3 years ago by Jautis ▴ 560
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1
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1.5k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
2.3 years ago by Jautis ▴ 560
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0
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1.9k
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Comment: Comment: Merge two vcf's, keep only intersection of REF/ALT alleles
2.3 years ago by Jautis ▴ 560
1
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1.3k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
2.4 years ago by Jautis ▴ 560
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1
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1.3k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
2.4 years ago by Jautis ▴ 560
1
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0
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815
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Comment: Comment: Finding a sequence
2.4 years ago by Jautis ▴ 560
1
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1
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4.4k
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Comment: Comment: fastqc html file
2.4 years ago by Jautis ▴ 560
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1
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4.3k
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Comment: Comment: multiqc could not generate results
2.4 years ago by Jautis ▴ 560
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888
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Comment: Comment: Conserved regions in multiple fasta files (multiple species)?
2.4 years ago by Jautis ▴ 560
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4.4k
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Comment: Comment: fastqc html file
2.4 years ago by Jautis ▴ 560
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1.2k
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Comment: Comment: Bam file: replace low quality bases with "N"
2.6 years ago by Jautis ▴ 560
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1
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1.7k
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Comment: Comment: limma+voom flips the sign of the effect from CPM?
2.6 years ago by Jautis ▴ 560
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1
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1.7k
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Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.6 years ago by Jautis ▴ 560
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1
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1.7k
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Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.6 years ago by Jautis ▴ 560
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0
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2.3k
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Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
3.0 years ago by Jautis ▴ 560
1
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1
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2.3k
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Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
3.0 years ago by Jautis ▴ 560
0
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0
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994
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Comment: Comment: Could someone help me check what genomic position is this variant nomenclature r
3.0 years ago by Jautis ▴ 560
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1
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3.0k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
3.0 years ago by Jautis ▴ 560
1
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3.0k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
3.0 years ago by Jautis ▴ 560
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0
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1.8k
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Comment: Comment: Cannot color cells with 0 expression in certain color
3.0 years ago by Jautis ▴ 560
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0
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4.1k
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Comment: C: Calculating Tajima's D from SNP frequency data
3.3 years ago by Jautis ▴ 560
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0
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3.8k
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Comment: C: A strange R limma voom function mean-variance trend
3.3 years ago by Jautis ▴ 560
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0
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1.2k
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Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
3.8 years ago by Jautis ▴ 560
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1
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13k
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Comment: C: How to remove a list of reads from fastq file?
3.9 years ago by Jautis ▴ 560
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0
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2.4k
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Comment: C: sed (or similar) command to remove part of the FORMAT from a vcf file?
4.2 years ago by Jautis ▴ 560
0
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1
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14k
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Comment: C: How to combine chromosome vcf files
4.2 years ago by Jautis ▴ 560
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0
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2.6k
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Comment: C: Phylogenetic distance betwee species
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 560
2
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0
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4.5k
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Comment: C: Good Bioinformatics research papers
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 560
0
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1
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3.6k
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Comment: C: Taking genotypes out of a vcf file
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 560
0
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0
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13k
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Comment: C: Calculating the bisulfite conversion rate
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 560
0
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0
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1.8k
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Comment: C: vcftools minDP filter not working for samtools genotype calling output
4.6 years ago by Jautis ▴ 560
0
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2
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2.5k
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Comment: C: Error in transferring annotations to a new assembly using RATT
5.3 years ago by Jautis ▴ 560
0
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2
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2.5k
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Comment: C: Error in transferring annotations to a new assembly using RATT
5.3 years ago by Jautis ▴ 560
0
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0
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2.7k
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Comment: C: GOseq with non-supported organism
5.8 years ago by Jautis ▴ 560
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1
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1.5k
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Comment: C: Find chromosomal location of a scaffold
5.8 years ago by Jautis ▴ 560
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1
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1.5k
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Comment: C: Find chromosomal location of a scaffold
5.8 years ago by Jautis ▴ 560
0
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1
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3.7k
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Comment: C: Convert an altered sam file into a bam file
6.4 years ago by Jautis ▴ 560
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0
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1.2k
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Comment: C: Genotype calls for a list of variable sites
6.5 years ago by Jautis ▴ 560
1
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0
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7.0k
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Comment: C: Modifying fasta file based on vcf information
6.9 years ago by Jautis ▴ 560
0
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1
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1.9k
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Comment: C: Outputting DP4 flag in GATK
7.1 years ago by Jautis ▴ 560
0
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1
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1.6k
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Comment: C: Getting reads that end at a digest site from a sam/bam file
7.1 years ago by Jautis ▴ 560
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