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Comment: Comment: Dramatic decrease of mapping efficiency between Bwameth and Bismark
5 months ago by reza.jabal ▴ 570
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478
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Comment: Comment: how do you know an SV is located in exton, intron or Intergenic region
6 months ago by reza.jabal ▴ 570
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1.6k
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Answer: A: How to calculate the conservation score of a gene
2.6 years ago by reza.jabal ▴ 570
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1
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1.6k
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Comment: C: How to calculate the conservation score of a gene
2.6 years ago by reza.jabal ▴ 570
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533
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Comment: C: Time series with biological replicates
2.6 years ago by reza.jabal ▴ 570
2
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494
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Answer: A: Understanding SNP variant output
2.6 years ago by reza.jabal ▴ 570
13
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1
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4.6k
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Answer: A: What is a suitable LD threshold for LD pruning of snp data?
2.7 years ago by reza.jabal ▴ 570
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1.1k
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Comment: C: extract genes and functions +/-50kb around a SNP
3.2 years ago by reza.jabal ▴ 570
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3.6k
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Answer: A: How does one compare allele frequencies of sequenced cases to database controls
updated 3.4 years ago by 38k • written 7.4 years ago by ▴ 570
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1.7k
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Comment: C: Filtering multiple single person structural variant VCF files by type of SV
3.4 years ago by reza.jabal ▴ 570
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1
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1.7k
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Comment: C: Filtering multiple single person structural variant VCF files by type of SV
3.4 years ago by reza.jabal ▴ 570
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1.1k
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Comment: C: Fastq to VCF pipeline configuration for low coverage data
3.4 years ago by reza.jabal ▴ 570
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1
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1.7k
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Comment: C: Filtering multiple single person structural variant VCF files by type of SV
3.4 years ago by reza.jabal ▴ 570
4
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4
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6.7k
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VCF to ANNOVAR format
next-gen software error
updated 3.4 years ago by 20 • written 7.4 years ago by ▴ 570
1
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0
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736
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Answer: A: Stats on WGS variant calls
3.7 years ago by reza.jabal ▴ 570
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2.9k
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Comment: C: Get gene counts from *.sam file and annotation
4.5 years ago by reza.jabal ▴ 570
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1
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2.9k
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Comment: C: Get gene counts from *.sam file and annotation
4.5 years ago by reza.jabal ▴ 570
3
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4
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1.9k
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Identifying Split-Reads in WES data!
sequencing next-gen genome
updated 4.5 years ago by 38k • written 7.1 years ago by ▴ 570
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1.9k
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Comment: C: Identifying Split-Reads in WES data!
updated 4.5 years ago by 38k • written 7.1 years ago by ▴ 570
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0
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1.9k
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Comment: C: Identifying Split-Reads in WES data!
updated 4.5 years ago by 38k • written 7.1 years ago by ▴ 570
1
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1
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2.5k
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Answer: A: pfam enrichment analysis of RNAseq data
4.7 years ago by reza.jabal ▴ 570
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1.4k
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Comment: C: How to update hg19 vcf genomic co-ordinate to LRG/RefSeq cDNA co-ordinate
4.9 years ago by reza.jabal ▴ 570
2
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1
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1.4k
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Answer: A: How to update hg19 vcf genomic co-ordinate to LRG/RefSeq cDNA co-ordinate
4.9 years ago by reza.jabal ▴ 570
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1
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1.4k
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Comment: C: Remap variants from hg19 to LRG/RefSeq
4.9 years ago by reza.jabal ▴ 570
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0
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1.8k
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Comment: C: How to extract PRDM9 binding motifs in bed format?
5.0 years ago by reza.jabal ▴ 570
3
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6
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1.8k
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How to extract PRDM9 binding motifs in bed format?
ChIP-Seq genome
updated 5.0 years ago by 34k • written 5.0 years ago by ▴ 570
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1.8k
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Comment: C: How to extract PRDM9 binding motifs in bed format?
5.0 years ago by reza.jabal ▴ 570
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0
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1.8k
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Comment: C: How to extract PRDM9 binding motifs in bed format?
5.0 years ago by reza.jabal ▴ 570
0
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1
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2.2k
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Comment: C: Calculating distance matrix of RNA-seq data
5.0 years ago by reza.jabal ▴ 570
0
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1
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1.4k
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Comment: C: Advice for the following PCA analysis
5.1 years ago by reza.jabal ▴ 570
0
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1
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1.4k
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Comment: C: Advice for the following PCA analysis
5.1 years ago by reza.jabal ▴ 570
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0
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7.1k
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Comment: C: Dealing with half missing calls in ".ped" file
5.1 years ago by reza.jabal ▴ 570
0
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1
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7.1k
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Comment: C: Dealing with half missing calls in ".ped" file
5.1 years ago by reza.jabal ▴ 570
1
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1
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7.1k
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Comment: C: Dealing with half missing calls in ".ped" file
5.1 years ago by reza.jabal ▴ 570
1
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1
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7.1k
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Comment: C: Dealing with half missing calls in ".ped" file
5.1 years ago by reza.jabal ▴ 570
7
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13
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7.1k
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Dealing with half missing calls in ".ped" file
software error SNP next-gen PLINK
updated 5.1 years ago by ★ 1.7k • written 5.1 years ago by ▴ 570
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0
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2.4k
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Comment: C: Issue with ExAC and 1000g hg38 lifted-over data and systematic failure of annota
5.9 years ago by reza.jabal ▴ 570
0
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2
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2.4k
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Issue with ExAC and 1000g hg38 lifted-over data and systematic failure of annotation softwares!
annotation Exac 1000g hg38
updated 5.9 years ago by ★ 1.9k • written 6.1 years ago by ▴ 570
0
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1
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2.8k
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Comment: C: Querying positions (bed file) towards BAM files using samtools mpileup
6.1 years ago by reza.jabal ▴ 570
0
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0
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19k
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Answer: A: finding adapters from fastq file
6.1 years ago by reza.jabal ▴ 570
0
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1
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2.8k
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Comment: C: Querying positions (bed file) towards BAM files using samtools mpileup
6.1 years ago by reza.jabal ▴ 570
2
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0
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3.6k
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Answer: A: GBS SNPs calling
6.1 years ago by reza.jabal ▴ 570
1
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1
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108k
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Answer: A: The Biostar Handbook. A bioinformatics e-book for beginners.
6.1 years ago by reza.jabal ▴ 570
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0
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6.1k
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Answer: A: Plotting Venn diagram for multiple BED files
6.1 years ago by reza.jabal ▴ 570
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0
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1.4k
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VerifyBamID freemix score?
ngs
6.5 years ago by reza.jabal ▴ 570
0
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1
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1.5k
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Comment: C: Extracting reads outside the boundaries in a BED file
6.7 years ago by reza.jabal ▴ 570
0
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1
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1.5k
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Comment: C: Extracting reads outside the boundaries in a BED file
6.7 years ago by reza.jabal ▴ 570
1
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0
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2.7k
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Answer: A: Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
6.7 years ago by reza.jabal ▴ 570
1
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1
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2.8k
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Comment: C: Linkage analysis for dummies
6.7 years ago by reza.jabal ▴ 570
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0
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2.8k
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Answer: A: Linkage analysis for dummies
6.7 years ago by reza.jabal ▴ 570
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