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Comment: Comment: Dramatic decrease of mapping efficiency between Bwameth and Bismark
2.7 years ago by reza.jabal ▴ 580
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2.1k
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Comment: Comment: how do you know an SV is located in exton, intron or Intergenic region
2.7 years ago by reza.jabal ▴ 580
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3.3k
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Answer: A: How to calculate the conservation score of a gene
4.9 years ago by reza.jabal ▴ 580
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1
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3.3k
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Comment: C: How to calculate the conservation score of a gene
4.9 years ago by reza.jabal ▴ 580
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1.0k
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Comment: C: Time series with biological replicates
4.9 years ago by reza.jabal ▴ 580
2
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1.1k
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Answer: A: Understanding SNP variant output
4.9 years ago by reza.jabal ▴ 580
14
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1
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10k
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Answer: A: What is a suitable LD threshold for LD pruning of snp data?
4.9 years ago by reza.jabal ▴ 580
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2.4k
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Comment: C: extract genes and functions +/-50kb around a SNP
5.4 years ago by reza.jabal ▴ 580
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4.8k
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Answer: A: How does one compare allele frequencies of sequenced cases to database controls
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 580
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3.2k
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Comment: C: Filtering multiple single person structural variant VCF files by type of SV
5.6 years ago by reza.jabal ▴ 580
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3.2k
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Comment: C: Filtering multiple single person structural variant VCF files by type of SV
5.6 years ago by reza.jabal ▴ 580
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1.8k
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Comment: C: Fastq to VCF pipeline configuration for low coverage data
5.6 years ago by reza.jabal ▴ 580
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1
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3.2k
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Comment: C: Filtering multiple single person structural variant VCF files by type of SV
5.6 years ago by reza.jabal ▴ 580
4
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4
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8.8k
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VCF to ANNOVAR format
next-gen software error
updated 5.7 years ago by 20 • written 9.7 years ago by ▴ 580
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1.3k
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Answer: A: Stats on WGS variant calls
5.9 years ago by reza.jabal ▴ 580
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4.3k
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Comment: C: Get gene counts from *.sam file and annotation
6.7 years ago by reza.jabal ▴ 580
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1
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4.3k
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Comment: C: Get gene counts from *.sam file and annotation
6.7 years ago by reza.jabal ▴ 580
3
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4
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2.9k
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Identifying Split-Reads in WES data!
sequencing next-gen genome
updated 6.7 years ago by 45k • written 9.3 years ago by ▴ 580
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2.9k
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Comment: C: Identifying Split-Reads in WES data!
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 580
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0
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2.9k
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Comment: C: Identifying Split-Reads in WES data!
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 580
1
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1
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3.6k
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Answer: A: pfam enrichment analysis of RNAseq data
6.9 years ago by reza.jabal ▴ 580
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2.5k
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Comment: C: How to update hg19 vcf genomic co-ordinate to LRG/RefSeq cDNA co-ordinate
7.2 years ago by reza.jabal ▴ 580
2
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1
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2.5k
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Answer: A: How to update hg19 vcf genomic co-ordinate to LRG/RefSeq cDNA co-ordinate
7.2 years ago by reza.jabal ▴ 580
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2.5k
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Comment: C: Remap variants from hg19 to LRG/RefSeq
7.2 years ago by reza.jabal ▴ 580
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3.0k
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Comment: C: How to extract PRDM9 binding motifs in bed format?
7.2 years ago by reza.jabal ▴ 580
3
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6
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3.0k
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How to extract PRDM9 binding motifs in bed format?
ChIP-Seq genome
updated 7.2 years ago by 36k • written 7.2 years ago by ▴ 580
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3.0k
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Comment: C: How to extract PRDM9 binding motifs in bed format?
7.2 years ago by reza.jabal ▴ 580
0
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0
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3.0k
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Comment: C: How to extract PRDM9 binding motifs in bed format?
7.2 years ago by reza.jabal ▴ 580
0
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1
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3.2k
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Comment: C: Calculating distance matrix of RNA-seq data
7.2 years ago by reza.jabal ▴ 580
0
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1
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2.4k
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Comment: C: Advice for the following PCA analysis
7.3 years ago by reza.jabal ▴ 580
0
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1
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2.4k
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Comment: C: Advice for the following PCA analysis
7.3 years ago by reza.jabal ▴ 580
0
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0
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11k
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Comment: C: Dealing with half missing calls in ".ped" file
7.3 years ago by reza.jabal ▴ 580
0
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1
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11k
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Comment: C: Dealing with half missing calls in ".ped" file
7.4 years ago by reza.jabal ▴ 580
1
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1
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11k
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Comment: C: Dealing with half missing calls in ".ped" file
7.4 years ago by reza.jabal ▴ 580
1
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1
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11k
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Comment: C: Dealing with half missing calls in ".ped" file
7.4 years ago by reza.jabal ▴ 580
7
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13
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11k
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Dealing with half missing calls in ".ped" file
software error SNP next-gen PLINK
updated 7.4 years ago by ★ 1.7k • written 7.4 years ago by ▴ 580
0
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0
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3.4k
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Comment: C: Issue with ExAC and 1000g hg38 lifted-over data and systematic failure of annota
8.1 years ago by reza.jabal ▴ 580
0
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2
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3.4k
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Issue with ExAC and 1000g hg38 lifted-over data and systematic failure of annotation softwares!
annotation Exac 1000g hg38
updated 8.1 years ago by ★ 1.9k • written 8.3 years ago by ▴ 580
0
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1
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3.9k
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Comment: C: Querying positions (bed file) towards BAM files using samtools mpileup
8.3 years ago by reza.jabal ▴ 580
0
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0
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26k
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Answer: A: finding adapters from fastq file
8.3 years ago by reza.jabal ▴ 580
0
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1
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3.9k
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Comment: C: Querying positions (bed file) towards BAM files using samtools mpileup
8.3 years ago by reza.jabal ▴ 580
2
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0
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5.0k
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Answer: A: GBS SNPs calling
8.3 years ago by reza.jabal ▴ 580
1
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1
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180k
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Answer: A: The Biostar Handbook. A bioinformatics e-book for beginners.
8.4 years ago by reza.jabal ▴ 580
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0
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8.0k
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Answer: A: Plotting Venn diagram for multiple BED files
8.4 years ago by reza.jabal ▴ 580
0
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0
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1.8k
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VerifyBamID freemix score?
ngs
8.7 years ago by reza.jabal ▴ 580
0
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1
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2.2k
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Comment: C: Extracting reads outside the boundaries in a BED file
8.9 years ago by reza.jabal ▴ 580
0
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1
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2.2k
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Comment: C: Extracting reads outside the boundaries in a BED file
8.9 years ago by reza.jabal ▴ 580
1
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0
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3.5k
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Answer: A: Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
8.9 years ago by reza.jabal ▴ 580
1
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1
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4.2k
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Comment: C: Linkage analysis for dummies
8.9 years ago by reza.jabal ▴ 580
0
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0
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4.2k
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Answer: A: Linkage analysis for dummies
8.9 years ago by reza.jabal ▴ 580
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