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372
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Answer: Answer: Biological replicates in RNA-seq
14 days ago by mark.ziemann ★ 1.8k
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1
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209
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Answer: Answer: clusterprofile enrichment analysis
15 days ago by mark.ziemann ★ 1.8k
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0
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755
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
5 months ago by mark.ziemann ★ 1.8k
3
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1
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501
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Answer: Answer: What exactly are unmappable regions?
5 months ago by mark.ziemann ★ 1.8k
2
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1
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866
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Answer: Answer: gseGO by fold-change returns errors
5 months ago by mark.ziemann ★ 1.8k
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1
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343
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
5 months ago by mark.ziemann ★ 1.8k
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0
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468
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
5 months ago by mark.ziemann ★ 1.8k
3
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0
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713
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Answer: Answer: How to create a new gene signature from RNAseq data
10 months ago by mark.ziemann ★ 1.8k
0
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0
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391
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Comment: Comment: Finding the similarity between two arrays of sequences
10 months ago by mark.ziemann ★ 1.8k
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1
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414
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Answer: Answer: Horizontal Gene Tranfer/Recombination
10 months ago by mark.ziemann ★ 1.8k
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0
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966
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Comment: Comment: feature counts invalid parameter
10 months ago by mark.ziemann ★ 1.8k
3
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1
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424
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
10 months ago by mark.ziemann ★ 1.8k
2
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1
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536
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Comment: Comment: GSEA - Software or R
10 months ago by mark.ziemann ★ 1.8k
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1
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458
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Comment: Comment: blastn command line
10 months ago by mark.ziemann ★ 1.8k
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1
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503
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Answer: Answer: sequence error
10 months ago by mark.ziemann ★ 1.8k
2
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0
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716
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Answer: Answer: GC content calculation in percentage
10 months ago by mark.ziemann ★ 1.8k
0
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0
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370
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
10 months ago by mark.ziemann ★ 1.8k
0
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0
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1.0k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
10 months ago by mark.ziemann ★ 1.8k
3
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2
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1.0k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
10 months ago by mark.ziemann ★ 1.8k
1
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0
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469
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Comment: Comment: DNA sequencing from cord blood stem cells
10 months ago by mark.ziemann ★ 1.8k
1
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0
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299
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
10 months ago by mark.ziemann ★ 1.8k
2
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1
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469
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Answer: Answer: DNA sequencing from cord blood stem cells
10 months ago by mark.ziemann ★ 1.8k
2
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0
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309
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Answer: Answer: Accessing particular gene set with msigdbr on R
10 months ago by mark.ziemann ★ 1.8k
4
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1
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439
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Answer: Answer: Repeats/Transposons finding
10 months ago by mark.ziemann ★ 1.8k
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1
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382
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Answer: Answer: How to get gene expression data from list of gene
10 months ago by mark.ziemann ★ 1.8k
0
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0
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416
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Comment: Comment: 3d plot in matplotlib of my own data
11 months ago by mark.ziemann ★ 1.8k
2
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0
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397
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
11 months ago by mark.ziemann ★ 1.8k
1
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0
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224
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Answer: Answer: Bacterial small-rna analysis
11 months ago by mark.ziemann ★ 1.8k
0
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0
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1.6k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
11 months ago by mark.ziemann ★ 1.8k
0
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0
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896
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Comment: Comment: RepeatMasker error
11 months ago by mark.ziemann ★ 1.8k
0
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1
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1.6k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
11 months ago by mark.ziemann ★ 1.8k
2
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0
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361
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
11 months ago by mark.ziemann ★ 1.8k
1
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0
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314
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Answer: Answer: How to identify the genome build a dataset was aligned too?
11 months ago by mark.ziemann ★ 1.8k
0
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0
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577
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Comment: Comment: NGS reads calculation
11 months ago by mark.ziemann ★ 1.8k
1
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1
reply
896
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Comment: Comment: RepeatMasker error
11 months ago by mark.ziemann ★ 1.8k
15
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11
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3.7k
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9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 21 days ago by 39k • written 15 months ago by ★ 1.8k
1
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0
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1.1k
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Comment: Comment: DMR calling for EWAS meta-analysis
18 months ago by mark.ziemann ★ 1.8k
0
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1
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805
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Comment: Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
23 months ago by mark.ziemann ★ 1.8k
1
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2
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1.1k
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DMR calling for EWAS meta-analysis
DNA methylation Epigenetics DMR calling
18 months ago by mark.ziemann ★ 1.8k
0
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0
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610
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Comment: C: Tool/Pipeline to get annotations from RNA-Seq
2.6 years ago by mark.ziemann ★ 1.8k
0
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0
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932
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Answer: A: Number of replicates in each group in RNA seq
2.7 years ago by mark.ziemann ★ 1.8k
1
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0
replies
682
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Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
2.7 years ago by mark.ziemann ★ 1.8k
1
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1
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1.3k
views
Comment: C: Any reason for higher reported levels of non-CG methylation when analysing non-d
3.3 years ago by mark.ziemann ★ 1.8k
0
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0
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1.8k
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Comment: C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
3.3 years ago by mark.ziemann ★ 1.8k
0
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0
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2.4k
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Comment: C: How to get 1 top hit only for each query in blastx
3.3 years ago by mark.ziemann ★ 1.8k
0
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1
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884
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Comment: C: Macs2 output shows only single basepair peak instead of a section of DNA
3.3 years ago by mark.ziemann ★ 1.8k
0
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0
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2.8k
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Comment: C: RNA seq with 2 biological replicates
3.3 years ago by mark.ziemann ★ 1.8k
0
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0
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1.1k
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Answer: A: Location of Genes on Chromosome
3.3 years ago by mark.ziemann ★ 1.8k
0
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1
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764
views
Comment: C: find a correct gene symbol for lncRNA
3.3 years ago by mark.ziemann ★ 1.8k
0
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1
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4.8k
views
Answer: A: /bin/bash/ command not found
3.3 years ago by mark.ziemann ★ 1.8k
197 results • Page 1 of 4
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