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Comment: Comment: transcriptomic data for molecular subtyping
8 months ago by mark.ziemann ★ 1.9k
2
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0
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579
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Answer: Answer: How to find GO function from GEO2R results
8 months ago by mark.ziemann ★ 1.9k
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1
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519
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Answer: Answer: transcriptomic data for molecular subtyping
8 months ago by mark.ziemann ★ 1.9k
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0
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392
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Answer: Answer: Aneuploidy analysis from WGS
8 months ago by mark.ziemann ★ 1.9k
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1
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710
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Comment: Comment: Simulation of gene level methylation data
8 months ago by mark.ziemann ★ 1.9k
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2
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1.2k
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Answer: Answer: Geo2R troubleshooting
9 months ago by mark.ziemann ★ 1.9k
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1
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710
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Answer: Answer: Simulation of gene level methylation data
9 months ago by mark.ziemann ★ 1.9k
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1
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1.0k
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Answer: Answer: Methods to analyze EM-seq data
9 months ago by mark.ziemann ★ 1.9k
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611
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Comment: Comment: Error in mitch reports in R
9 months ago by mark.ziemann ★ 1.9k
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0
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524
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Answer: Answer: mitch analysis report priority by standard deviation
9 months ago by mark.ziemann ★ 1.9k
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1
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454
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Answer: Answer: How to get differntial Protein expression from protein abundance?
9 months ago by mark.ziemann ★ 1.9k
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646
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Comment: Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
14 months ago by mark.ziemann ★ 1.9k
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1
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912
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Comment: Comment: ClusterProfiler GeneRatio demoninator not the same for all values
14 months ago by mark.ziemann ★ 1.9k
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0
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860
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Answer: Answer: Biological replicates in RNA-seq
17 months ago by mark.ziemann ★ 1.9k
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1
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651
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Answer: Answer: clusterprofile enrichment analysis
17 months ago by mark.ziemann ★ 1.9k
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0
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1.6k
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
22 months ago by mark.ziemann ★ 1.9k
3
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1
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1.1k
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Answer: Answer: What exactly are unmappable regions?
22 months ago by mark.ziemann ★ 1.9k
3
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1
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2.1k
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Answer: Answer: gseGO by fold-change returns errors
22 months ago by mark.ziemann ★ 1.9k
1
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1
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727
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
23 months ago by mark.ziemann ★ 1.9k
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0
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914
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
23 months ago by mark.ziemann ★ 1.9k
4
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0
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1.8k
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Answer: Answer: How to create a new gene signature from RNAseq data
2.3 years ago by mark.ziemann ★ 1.9k
0
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0
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733
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Comment: Comment: Finding the similarity between two arrays of sequences
2.3 years ago by mark.ziemann ★ 1.9k
1
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1
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743
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Answer: Answer: Horizontal Gene Tranfer/Recombination
2.3 years ago by mark.ziemann ★ 1.9k
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0
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1.5k
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Comment: Comment: feature counts invalid parameter
2.3 years ago by mark.ziemann ★ 1.9k
3
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1
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718
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
2.3 years ago by mark.ziemann ★ 1.9k
2
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1
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1.0k
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Comment: Comment: GSEA - Software or R
2.3 years ago by mark.ziemann ★ 1.9k
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1
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818
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Comment: Comment: blastn command line
2.3 years ago by mark.ziemann ★ 1.9k
1
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1
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856
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Answer: Answer: sequence error
2.3 years ago by mark.ziemann ★ 1.9k
2
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0
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1.4k
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Answer: Answer: GC content calculation in percentage
2.3 years ago by mark.ziemann ★ 1.9k
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0
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668
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
2.3 years ago by mark.ziemann ★ 1.9k
0
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0
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1.8k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
2.3 years ago by mark.ziemann ★ 1.9k
3
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2
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1.8k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
2.3 years ago by mark.ziemann ★ 1.9k
1
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0
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917
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Comment: Comment: DNA sequencing from cord blood stem cells
2.3 years ago by mark.ziemann ★ 1.9k
1
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0
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635
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
2.3 years ago by mark.ziemann ★ 1.9k
2
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1
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917
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Answer: Answer: DNA sequencing from cord blood stem cells
2.3 years ago by mark.ziemann ★ 1.9k
2
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1
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898
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Answer: Answer: Accessing particular gene set with msigdbr on R
2.3 years ago by mark.ziemann ★ 1.9k
4
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1
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924
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Answer: Answer: Repeats/Transposons finding
2.3 years ago by mark.ziemann ★ 1.9k
0
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1
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683
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Answer: Answer: How to get gene expression data from list of gene
2.3 years ago by mark.ziemann ★ 1.9k
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0
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1.1k
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Comment: Comment: 3d plot in matplotlib of my own data
2.3 years ago by mark.ziemann ★ 1.9k
2
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0
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800
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
2.3 years ago by mark.ziemann ★ 1.9k
1
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0
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497
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Answer: Answer: Bacterial small-rna analysis
2.3 years ago by mark.ziemann ★ 1.9k
0
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0
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3.1k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
2.3 years ago by mark.ziemann ★ 1.9k
0
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0
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1.8k
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Comment: Comment: RepeatMasker error
2.3 years ago by mark.ziemann ★ 1.9k
0
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1
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3.1k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
2.3 years ago by mark.ziemann ★ 1.9k
2
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0
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690
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
2.3 years ago by mark.ziemann ★ 1.9k
1
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0
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578
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Answer: Answer: How to identify the genome build a dataset was aligned too?
2.3 years ago by mark.ziemann ★ 1.9k
0
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0
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1.0k
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Comment: Comment: NGS reads calculation
2.3 years ago by mark.ziemann ★ 1.9k
1
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1
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1.8k
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Comment: Comment: RepeatMasker error
2.3 years ago by mark.ziemann ★ 1.9k
16
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11
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5.4k
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9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 17 months ago by 44k • written 2.7 years ago by ★ 1.9k
1
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0
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1.5k
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Comment: Comment: DMR calling for EWAS meta-analysis
2.9 years ago by mark.ziemann ★ 1.9k
210 results • Page 1 of 5
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