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232
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
18 days ago by mark.ziemann ★ 1.8k
2
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1
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346
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Answer: Answer: What exactly are unmappable regions?
19 days ago by mark.ziemann ★ 1.8k
2
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1
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428
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Answer: Answer: gseGO by fold-change returns errors
21 days ago by mark.ziemann ★ 1.8k
1
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1
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267
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
6 weeks ago by mark.ziemann ★ 1.8k
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0
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368
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
6 weeks ago by mark.ziemann ★ 1.8k
3
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0
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500
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Answer: Answer: How to create a new gene signature from RNAseq data
5 months ago by mark.ziemann ★ 1.8k
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0
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292
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Comment: Comment: Finding the similarity between two arrays of sequences
6 months ago by mark.ziemann ★ 1.8k
1
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1
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346
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Answer: Answer: Horizontal Gene Tranfer/Recombination
6 months ago by mark.ziemann ★ 1.8k
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0
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678
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Comment: Comment: feature counts invalid parameter
6 months ago by mark.ziemann ★ 1.8k
3
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1
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365
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
6 months ago by mark.ziemann ★ 1.8k
2
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1
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429
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Comment: Comment: GSEA - Software or R
6 months ago by mark.ziemann ★ 1.8k
0
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1
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405
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Comment: Comment: blastn command line
6 months ago by mark.ziemann ★ 1.8k
1
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1
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447
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Answer: Answer: sequence error
6 months ago by mark.ziemann ★ 1.8k
2
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0
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578
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Answer: Answer: GC content calculation in percentage
6 months ago by mark.ziemann ★ 1.8k
0
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0
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323
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
6 months ago by mark.ziemann ★ 1.8k
0
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0
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921
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
6 months ago by mark.ziemann ★ 1.8k
3
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2
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921
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
6 months ago by mark.ziemann ★ 1.8k
1
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0
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401
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Comment: Comment: DNA sequencing from cord blood stem cells
6 months ago by mark.ziemann ★ 1.8k
1
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0
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244
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
6 months ago by mark.ziemann ★ 1.8k
2
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1
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401
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Answer: Answer: DNA sequencing from cord blood stem cells
6 months ago by mark.ziemann ★ 1.8k
2
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0
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240
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Answer: Answer: Accessing particular gene set with msigdbr on R
6 months ago by mark.ziemann ★ 1.8k
4
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1
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383
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Answer: Answer: Repeats/Transposons finding
6 months ago by mark.ziemann ★ 1.8k
0
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1
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324
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Answer: Answer: How to get gene expression data from list of gene
6 months ago by mark.ziemann ★ 1.8k
0
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0
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275
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Comment: Comment: 3d plot in matplotlib of my own data
6 months ago by mark.ziemann ★ 1.8k
2
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0
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307
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
6 months ago by mark.ziemann ★ 1.8k
1
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0
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193
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Answer: Answer: Bacterial small-rna analysis
6 months ago by mark.ziemann ★ 1.8k
0
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0
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1.2k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
6 months ago by mark.ziemann ★ 1.8k
0
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0
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736
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Comment: Comment: RepeatMasker error
6 months ago by mark.ziemann ★ 1.8k
0
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1
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1.2k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
6 months ago by mark.ziemann ★ 1.8k
2
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0
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289
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
6 months ago by mark.ziemann ★ 1.8k
1
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0
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257
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Answer: Answer: How to identify the genome build a dataset was aligned too?
6 months ago by mark.ziemann ★ 1.8k
0
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0
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493
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Comment: Comment: NGS reads calculation
6 months ago by mark.ziemann ★ 1.8k
1
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1
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736
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Comment: Comment: RepeatMasker error
6 months ago by mark.ziemann ★ 1.8k
15
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11
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3.4k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
DAVID enrichment ontology gene analysis GSEA
updated 3 months ago by 68k • written 10 months ago by ★ 1.8k
1
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0
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971
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Comment: Comment: DMR calling for EWAS meta-analysis
13 months ago by mark.ziemann ★ 1.8k
0
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1
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732
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Comment: Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
19 months ago by mark.ziemann ★ 1.8k
1
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2
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971
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DMR calling for EWAS meta-analysis
DNA methylation Epigenetics DMR calling
13 months ago by mark.ziemann ★ 1.8k
0
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0
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565
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Comment: C: Tool/Pipeline to get annotations from RNA-Seq
2.2 years ago by mark.ziemann ★ 1.8k
0
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0
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857
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Answer: A: Number of replicates in each group in RNA seq
2.3 years ago by mark.ziemann ★ 1.8k
1
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0
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628
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Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
2.3 years ago by mark.ziemann ★ 1.8k
1
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1
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1.3k
views
Comment: C: Any reason for higher reported levels of non-CG methylation when analysing non-d
2.9 years ago by mark.ziemann ★ 1.8k
0
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0
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1.7k
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Comment: C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
2.9 years ago by mark.ziemann ★ 1.8k
0
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0
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1.9k
views
Comment: C: How to get 1 top hit only for each query in blastx
2.9 years ago by mark.ziemann ★ 1.8k
0
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1
reply
816
views
Comment: C: Macs2 output shows only single basepair peak instead of a section of DNA
2.9 years ago by mark.ziemann ★ 1.8k
0
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0
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2.4k
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Comment: C: RNA seq with 2 biological replicates
2.9 years ago by mark.ziemann ★ 1.8k
0
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0
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1.1k
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Answer: A: Location of Genes on Chromosome
3.0 years ago by mark.ziemann ★ 1.8k
0
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1
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709
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Comment: C: find a correct gene symbol for lncRNA
3.0 years ago by mark.ziemann ★ 1.8k
0
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1
reply
4.4k
views
Answer: A: /bin/bash/ command not found
3.0 years ago by mark.ziemann ★ 1.8k
0
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0
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4.4k
views
Comment: C: /bin/bash/ command not found
3.0 years ago by mark.ziemann ★ 1.8k
2
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1
reply
2.4k
views
Answer: A: RNA seq with 2 biological replicates
3.0 years ago by mark.ziemann ★ 1.8k
195 results • Page 1 of 4
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