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232
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Comment:
Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
18 days ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
346
views
Answer:
Answer: What exactly are unmappable regions?
19 days ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
428
views
Answer:
Answer: gseGO by fold-change returns errors
21 days ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
267
views
Comment:
Comment: How can I quantify degradation of DNA present in the sample after sequencing?
6 weeks ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
368
views
Answer:
Answer: Combining multiple datasets increases the fgsea p-value
6 weeks ago by
mark.ziemann
★ 1.8k
3
votes
0
replies
500
views
Answer:
Answer: How to create a new gene signature from RNAseq data
5 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
292
views
Comment:
Comment: Finding the similarity between two arrays of sequences
6 months ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
346
views
Answer:
Answer: Horizontal Gene Tranfer/Recombination
6 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
678
views
Comment:
Comment: feature counts invalid parameter
6 months ago by
mark.ziemann
★ 1.8k
3
votes
1
reply
365
views
Answer:
Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
6 months ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
429
views
Comment:
Comment: GSEA - Software or R
6 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
405
views
Comment:
Comment: blastn command line
6 months ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
447
views
Answer:
Answer: sequence error
6 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
578
views
Answer:
Answer: GC content calculation in percentage
6 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
323
views
Answer:
Answer: Pathway Enrichment Analysis according to tumor mutation burden.
6 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
921
views
Comment:
Comment: How can I do an inner_join with multiple .csv files on the linux command line?
6 months ago by
mark.ziemann
★ 1.8k
3
votes
2
replies
921
views
Answer:
Answer: How can I do an inner_join with multiple .csv files on the linux command line?
6 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
401
views
Comment:
Comment: DNA sequencing from cord blood stem cells
6 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
244
views
Comment:
Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
6 months ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
401
views
Answer:
Answer: DNA sequencing from cord blood stem cells
6 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
240
views
Answer:
Answer: Accessing particular gene set with msigdbr on R
6 months ago by
mark.ziemann
★ 1.8k
4
votes
1
reply
383
views
Answer:
Answer: Repeats/Transposons finding
6 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
324
views
Answer:
Answer: How to get gene expression data from list of gene
6 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
275
views
Comment:
Comment: 3d plot in matplotlib of my own data
6 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
307
views
Comment:
Comment: Good statistics for RNA-seq alignments using RSEM
6 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
193
views
Answer:
Answer: Bacterial small-rna analysis
6 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.2k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
6 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
736
views
Comment:
Comment: RepeatMasker error
6 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
1.2k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
6 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
289
views
Answer:
Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
6 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
257
views
Answer:
Answer: How to identify the genome build a dataset was aligned too?
6 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
493
views
Comment:
Comment: NGS reads calculation
6 months ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
736
views
Comment:
Comment: RepeatMasker error
6 months ago by
mark.ziemann
★ 1.8k
15
votes
11
replies
3.4k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
DAVID
enrichment
ontology
gene
analysis
GSEA
updated 3 months ago by
ATpoint
68k • written 10 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
971
views
Comment:
Comment: DMR calling for EWAS meta-analysis
13 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
732
views
Comment:
Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
19 months ago by
mark.ziemann
★ 1.8k
1
vote
2
replies
971
views
DMR calling for EWAS meta-analysis
DNA methylation
Epigenetics
DMR calling
13 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
565
views
Comment:
C: Tool/Pipeline to get annotations from RNA-Seq
2.2 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
857
views
Answer:
A: Number of replicates in each group in RNA seq
2.3 years ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
628
views
Answer:
A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
2.3 years ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
1.3k
views
Comment:
C: Any reason for higher reported levels of non-CG methylation when analysing non-d
2.9 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.7k
views
Comment:
C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
2.9 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.9k
views
Comment:
C: How to get 1 top hit only for each query in blastx
2.9 years ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
816
views
Comment:
C: Macs2 output shows only single basepair peak instead of a section of DNA
2.9 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
2.4k
views
Comment:
C: RNA seq with 2 biological replicates
2.9 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.1k
views
Answer:
A: Location of Genes on Chromosome
3.0 years ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
709
views
Comment:
C: find a correct gene symbol for lncRNA
3.0 years ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
4.4k
views
Answer:
A: /bin/bash/ command not found
3.0 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
4.4k
views
Comment:
C: /bin/bash/ command not found
3.0 years ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
2.4k
views
Answer:
A: RNA seq with 2 biological replicates
3.0 years ago by
mark.ziemann
★ 1.8k
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