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372
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Answer:
Answer: Biological replicates in RNA-seq
14 days ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
209
views
Answer:
Answer: clusterprofile enrichment analysis
15 days ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
755
views
Comment:
Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
5 months ago by
mark.ziemann
★ 1.8k
3
votes
1
reply
501
views
Answer:
Answer: What exactly are unmappable regions?
5 months ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
866
views
Answer:
Answer: gseGO by fold-change returns errors
5 months ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
343
views
Comment:
Comment: How can I quantify degradation of DNA present in the sample after sequencing?
5 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
468
views
Answer:
Answer: Combining multiple datasets increases the fgsea p-value
5 months ago by
mark.ziemann
★ 1.8k
3
votes
0
replies
713
views
Answer:
Answer: How to create a new gene signature from RNAseq data
10 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
391
views
Comment:
Comment: Finding the similarity between two arrays of sequences
10 months ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
414
views
Answer:
Answer: Horizontal Gene Tranfer/Recombination
10 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
966
views
Comment:
Comment: feature counts invalid parameter
10 months ago by
mark.ziemann
★ 1.8k
3
votes
1
reply
424
views
Answer:
Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
10 months ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
536
views
Comment:
Comment: GSEA - Software or R
10 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
458
views
Comment:
Comment: blastn command line
10 months ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
503
views
Answer:
Answer: sequence error
10 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
716
views
Answer:
Answer: GC content calculation in percentage
10 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
370
views
Answer:
Answer: Pathway Enrichment Analysis according to tumor mutation burden.
10 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.0k
views
Comment:
Comment: How can I do an inner_join with multiple .csv files on the linux command line?
10 months ago by
mark.ziemann
★ 1.8k
3
votes
2
replies
1.0k
views
Answer:
Answer: How can I do an inner_join with multiple .csv files on the linux command line?
10 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
469
views
Comment:
Comment: DNA sequencing from cord blood stem cells
10 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
299
views
Comment:
Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
10 months ago by
mark.ziemann
★ 1.8k
2
votes
1
reply
469
views
Answer:
Answer: DNA sequencing from cord blood stem cells
10 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
309
views
Answer:
Answer: Accessing particular gene set with msigdbr on R
10 months ago by
mark.ziemann
★ 1.8k
4
votes
1
reply
439
views
Answer:
Answer: Repeats/Transposons finding
10 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
382
views
Answer:
Answer: How to get gene expression data from list of gene
10 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
416
views
Comment:
Comment: 3d plot in matplotlib of my own data
11 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
397
views
Comment:
Comment: Good statistics for RNA-seq alignments using RSEM
11 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
224
views
Answer:
Answer: Bacterial small-rna analysis
11 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.6k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
11 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
896
views
Comment:
Comment: RepeatMasker error
11 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
1.6k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
11 months ago by
mark.ziemann
★ 1.8k
2
votes
0
replies
361
views
Answer:
Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
11 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
314
views
Answer:
Answer: How to identify the genome build a dataset was aligned too?
11 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
577
views
Comment:
Comment: NGS reads calculation
11 months ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
896
views
Comment:
Comment: RepeatMasker error
11 months ago by
mark.ziemann
★ 1.8k
15
votes
11
replies
3.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 21 days ago by
Ram
39k • written 15 months ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
1.1k
views
Comment:
Comment: DMR calling for EWAS meta-analysis
18 months ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
805
views
Comment:
Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
23 months ago by
mark.ziemann
★ 1.8k
1
vote
2
replies
1.1k
views
DMR calling for EWAS meta-analysis
DNA methylation
Epigenetics
DMR calling
18 months ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
610
views
Comment:
C: Tool/Pipeline to get annotations from RNA-Seq
2.6 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
932
views
Answer:
A: Number of replicates in each group in RNA seq
2.7 years ago by
mark.ziemann
★ 1.8k
1
vote
0
replies
682
views
Answer:
A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
2.7 years ago by
mark.ziemann
★ 1.8k
1
vote
1
reply
1.3k
views
Comment:
C: Any reason for higher reported levels of non-CG methylation when analysing non-d
3.3 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.8k
views
Comment:
C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
3.3 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
2.4k
views
Comment:
C: How to get 1 top hit only for each query in blastx
3.3 years ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
884
views
Comment:
C: Macs2 output shows only single basepair peak instead of a section of DNA
3.3 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
2.8k
views
Comment:
C: RNA seq with 2 biological replicates
3.3 years ago by
mark.ziemann
★ 1.8k
0
votes
0
replies
1.1k
views
Answer:
A: Location of Genes on Chromosome
3.3 years ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
764
views
Comment:
C: find a correct gene symbol for lncRNA
3.3 years ago by
mark.ziemann
★ 1.8k
0
votes
1
reply
4.8k
views
Answer:
A: /bin/bash/ command not found
3.3 years ago by
mark.ziemann
★ 1.8k
197 results • Page
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