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2
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3.8k
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Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
7.7 years ago by mark.ziemann ★ 2.0k
3
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0
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2.6k
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Answer: A: Looking for publicly available dataset.
7.7 years ago by mark.ziemann ★ 2.0k
2
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0
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2.6k
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Answer: A: Download ENCODE Project BED files using REST API
8.0 years ago by mark.ziemann ★ 2.0k
1
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1
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4.0k
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Answer: A: Bismark Methyl-Seq Analysis
8.0 years ago by mark.ziemann ★ 2.0k
2
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1
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2.1k
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Answer: A: Recommended program for evaluating aligner sensitivity
8.0 years ago by mark.ziemann ★ 2.0k
0
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0
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3.4k
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Answer: A: Total RNA-seq miRNA detection query
8.0 years ago by mark.ziemann ★ 2.0k
0
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0
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1.7k
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Answer: A: CNV tool for small sequences
8.0 years ago by mark.ziemann ★ 2.0k
3
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1
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3.8k
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Answer: A: Why does RNA sequencing data has Thymine as opposed to Uracil? Theoretically, it
8.0 years ago by mark.ziemann ★ 2.0k
4
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0
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7.4k
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Answer: A: An approach for gene ontology and up- / down-regulated genes (RNAseq)
9.0 years ago by mark.ziemann ★ 2.0k
3
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0
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10k
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Answer: C: Problem with creating GSEA rank file
9.1 years ago by mark.ziemann ★ 2.0k
0
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1
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4.5k
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Answer: A: DESeq without replicate nbinomTest method
9.2 years ago by mark.ziemann ★ 2.0k
2
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0
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3.6k
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Answer: A: Is it ok to map RNA-seq reads on prokaryotic reference genome with bowtie2 ?
9.4 years ago by mark.ziemann ★ 2.0k
0
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0
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2.7k
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Answer: Answer: Align long nanopore minion cDNA reads
updated 2.8 years ago by 45k • written 9.9 years ago by ★ 2.0k
0
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1
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3.6k
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Answer: Answer: RNA-seq analysis without grouping data
updated 2.8 years ago by 45k • written 9.9 years ago by ★ 2.0k
1
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0
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2.8k
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Answer: Answer: Extracting certain gene sets from RNA data
updated 2.8 years ago by 45k • written 9.9 years ago by ★ 2.0k
4
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1
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5.6k
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Answer: Answer: combining multiple gz files in subfolders
updated 2.8 years ago by 45k • written 9.9 years ago by ★ 2.0k
3
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0
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5.1k
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Answer: Answer: Very short reads (20-22) , bowtie and tophat not doing gapped alignment
updated 2.7 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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1
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2.7k
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Answer: Answer: Problem with bad quality bases in RNAseq
updated 2.7 years ago by 45k • written 10.0 years ago by ★ 2.0k
1
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1
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3.4k
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Answer: A: Differential expression in edgeR with cuffdiff count output
10.0 years ago by mark.ziemann ★ 2.0k
0
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0
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5.5k
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Answer: Answer: Problems with STAR mapping output
updated 2.6 years ago by 45k • written 10.0 years ago by ★ 2.0k
0
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1
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2.3k
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Answer: Answer: Strategies For De Novo Assembly Of A Reference
updated 2.6 years ago by 45k • written 10.0 years ago by ★ 2.0k
1
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0
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2.4k
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Answer: Answer: what is applications of gene ranking except GSEA?
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
2
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0
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4.7k
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Answer: A: Comparing gene conservation across species
10.2 years ago by mark.ziemann ★ 2.0k
1
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1
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3.1k
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Answer: A: Promoter Motifs (+) and (-) strands
10.2 years ago by mark.ziemann ★ 2.0k
0
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0
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3.4k
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Answer: Answer: Get Allele Frequency of each SNP in RNASeq
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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1
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2.8k
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Answer: Answer: Finding ortholog transcript sequences after de novo transcriptome assembly
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
5
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0
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2.9k
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Answer: Answer: JAVA and NGS
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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0
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2.0k
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Answer: Answer: Getting BLAST Clusters Classifier performance for Protein classes
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
1
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0
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3.1k
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Answer: A: PSEA- protein set enrichment analsyis
10.2 years ago by mark.ziemann ★ 2.0k
2
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0
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2.0k
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Answer: Answer: look at expression by locus
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
1
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0
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2.4k
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Answer: Answer: Generate Simulated data for Differentially methylated regions (DMRs)
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
2
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1
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2.9k
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Answer: A: Transcriptome reconstruction from both short reads and long sequences
10.2 years ago by mark.ziemann ★ 2.0k
2
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0
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2.6k
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Answer: Answer: How to combine bisulfite sequencing data with Medip seq and/or MRE-seq
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
3
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0
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6.3k
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Answer: A: tRNA expression analysis from RNA-Seq
10.2 years ago by mark.ziemann ★ 2.0k
2
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1
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2.7k
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Answer: A: gene differential expression array analysis: weird pvalue distribution
10.2 years ago by mark.ziemann ★ 2.0k
1
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0
replies
2.1k
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Answer: Answer: Known transcription factor binding sites and enhancer locations in Pigs
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
1
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0
replies
5.9k
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Answer: Answer: z-Score vs fold enrichment
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
1
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1
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4.0k
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Answer: Answer: filter out low expressed RNA-seq genes using anova
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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0
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2.9k
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Answer: Answer: How to compare multiple microarray samples of small RNA expression from myeloid
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
1
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0
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2.7k
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Answer: A: Compare sample RNA-seq data with publicly available micro-array data
10.2 years ago by mark.ziemann ★ 2.0k
0
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1
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2.2k
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Answer: Answer: Tblastx returning only 400 hits
updated 2.4 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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0
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4.8k
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Answer: A: Is "paired reads have different names" error due to ! at beginning of line in fa
10.2 years ago by mark.ziemann ★ 2.0k
0
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0
replies
5.1k
views
Answer: Answer: bwa aln calculate SA coordinate issue
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
3
votes
2
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5.7k
views
Answer: A: Get all the translation start site for human genome
10.2 years ago by mark.ziemann ★ 2.0k
0
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1
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24k
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Answer: Answer: check if two columns match in 2 annotation files and print those lines to a new
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
2
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0
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1.7k
views
Answer: Answer: Dealing with sequencing data annotations
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
2
votes
0
replies
4.2k
views
Answer: Answer: Bacterial identification - PCR primers - unknown target
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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1
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6.4k
views
Answer: Answer: bedtools getfasta does not give a proper fasta output
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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0
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2.7k
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Answer: Answer: Tissue specific major transcript expressed?
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
1
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1
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2.1k
views
Answer: Answer: The hard way?
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
113 results • Page 2 of 3
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