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Comment: C: Choosing the best alignment or aligner
6.6 years ago by mark.ziemann ★ 2.0k
1
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0
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2.6k
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Comment: C: Looking for publicly available dataset.
7.0 years ago by mark.ziemann ★ 2.0k
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0
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1.7k
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Comment: C: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
7.3 years ago by mark.ziemann ★ 2.0k
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1
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2.9k
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Comment: C: WGBS - Methylation state at CpG to peak calls
7.6 years ago by mark.ziemann ★ 2.0k
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0
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6.8k
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Comment: C: Cut-off for genesets in GSEA
7.6 years ago by mark.ziemann ★ 2.0k
1
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1
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2.9k
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Comment: C: WGBS - Methylation state at CpG to peak calls
7.6 years ago by mark.ziemann ★ 2.0k
2
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1
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6.8k
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Comment: C: Cut-off for genesets in GSEA
7.6 years ago by mark.ziemann ★ 2.0k
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0
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2.5k
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Comment: C: Download ENCODE Project BED files using REST API
7.9 years ago by mark.ziemann ★ 2.0k
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1
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2.1k
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Comment: C: Recommended program for evaluating aligner sensitivity
8.0 years ago by mark.ziemann ★ 2.0k
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0
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1.7k
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Comment: C: Workflow to store and integrate multiple NGS datasets for easy access and analys
8.0 years ago by mark.ziemann ★ 2.0k
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0
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2.6k
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Comment: C: How good are bwa-mem and stampy when dealing with low quality reads?
8.1 years ago by mark.ziemann ★ 2.0k
0
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1
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2.1k
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Comment: C: Chloroplast genome: Need to close 2 gaps (~2Kbp), any suggestions?
8.1 years ago by mark.ziemann ★ 2.0k
0
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0
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1.6k
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Comment: C: Filtering DMRs
8.1 years ago by mark.ziemann ★ 2.0k
0
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1
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4.4k
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Comment: C: DESeq without replicate nbinomTest method
8.9 years ago by mark.ziemann ★ 2.0k
2
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0
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6.1k
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Comment: C: GSEA for RNA seq
9.1 years ago by mark.ziemann ★ 2.0k
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0
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2.1k
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Comment: C: Determining Fold Enrichment of TFBS Over Control Sequences
9.1 years ago by mark.ziemann ★ 2.0k
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0
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2.3k
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Comment: C: Co-variants in differential expression analysis
9.1 years ago by mark.ziemann ★ 2.0k
0
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0
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1.6k
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Comment: C: Mapping reads for gap closure in de novo assembly
9.1 years ago by mark.ziemann ★ 2.0k
0
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0
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13k
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Comment: C: Bwa-Meth: Align And Tabulate Bs-Seq Reads
9.1 years ago by mark.ziemann ★ 2.0k
0
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1
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1.9k
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Comment: C: best microRNA normalisation method
9.3 years ago by mark.ziemann ★ 2.0k
1
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1
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3.9k
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Comment: C: troubleshooting bowtie2 low mapping rates
9.4 years ago by mark.ziemann ★ 2.0k
0
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1
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3.9k
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Comment: C: troubleshooting bowtie2 low mapping rates
9.4 years ago by mark.ziemann ★ 2.0k
0
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1
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3.9k
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Comment: C: troubleshooting bowtie2 low mapping rates
9.4 years ago by mark.ziemann ★ 2.0k
0
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0
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19k
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Comment: C: GSEA Preranked analysis on RNA-SEQ
9.6 years ago by mark.ziemann ★ 2.0k
1
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1
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19k
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Comment: C: GSEA Preranked analysis on RNA-SEQ
9.6 years ago by mark.ziemann ★ 2.0k
1
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0
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5.5k
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Comment: C: Removing low complexity reads from RNA-seq
9.9 years ago by mark.ziemann ★ 2.0k
0
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1
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5.5k
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Comment: C: Removing low complexity reads from RNA-seq
9.9 years ago by mark.ziemann ★ 2.0k
0
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1
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3.7k
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Comment: C: Counting reads for gene transcripts with overlapping loci
10.0 years ago by mark.ziemann ★ 2.0k
0
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0
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2.5k
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Comment: C: How can i retrieve all cds from a ensembl genetree？
10.0 years ago by mark.ziemann ★ 2.0k
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0
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2.7k
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Comment: Comment: Determine mutational profile from a BAM file?
updated 2.4 years ago by 45k • written 10.1 years ago by ★ 2.0k
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0
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3.1k
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Comment: Comment: Question: How to compare the gene expression signature of Primary tumor cell and
updated 2.4 years ago by 45k • written 10.1 years ago by ★ 2.0k
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0
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2.9k
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Comment: Comment: Transcriptome reconstruction from both short reads and long sequences
updated 2.4 years ago by 45k • written 10.1 years ago by ★ 2.0k
0
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0
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2.0k
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Comment: C: smallRNA-seq data for normal bone marrow in Human
10.1 years ago by mark.ziemann ★ 2.0k
0
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1
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3.1k
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Comment: C: Question: How to compare the gene expression signature of Primary tumor cell and
10.1 years ago by mark.ziemann ★ 2.0k
2
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0
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4.1k
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Comment: C: Linc and miRNA in GTF file
10.1 years ago by mark.ziemann ★ 2.0k
0
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1
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2.0k
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Comment: Comment: The hard way?
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.0k
0
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0
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2.4k
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Comment: Comment: Annotation of miRNA targets
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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1
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2.7k
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Comment: Comment: samll RNA-seq data preproccess （ clipping the adapter sequences, removing read
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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1
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5.1k
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Comment: C: Count read with summarizeOverlaps result 0 for all sample
10.2 years ago by mark.ziemann ★ 2.0k
0
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1
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5.1k
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Comment: C: Count read with summarizeOverlaps result 0 for all sample
10.2 years ago by mark.ziemann ★ 2.0k
0
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0
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1.6k
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Comment: C: I am trying to find the homologs on ion channel genes in the sponge phylum.
10.2 years ago by mark.ziemann ★ 2.0k
0
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0
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2.6k
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Comment: Comment: Identify common genes and their respective DNA sequences
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
0
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0
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4.4k
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Comment: C: Precursor identification of mature miRNA
10.2 years ago by mark.ziemann ★ 2.0k
0
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1
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4.4k
views
Comment: Comment: Precursor identification of mature miRNA
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
2
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1
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19k
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Comment: C: GSEA Preranked analysis on RNA-SEQ
10.2 years ago by mark.ziemann ★ 2.0k
0
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0
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3.1k
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Comment: Comment: Mapping Issues with Bowtie2
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.0k
1
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0
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19k
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Comment: C: bwa mem vs bwa aln
10.2 years ago by mark.ziemann ★ 2.0k
0
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0
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3.1k
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Comment: C: CNV by read_depth approach
10.3 years ago by mark.ziemann ★ 2.0k
1
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0
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5.6k
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Comment: C: Integrating HTSeq count data of different samples
10.3 years ago by mark.ziemann ★ 2.0k
0
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1
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4.4k
views
Comment: C: Human Genome reference
10.3 years ago by mark.ziemann ★ 2.0k
106 results • Page 2 of 3
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