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2.7k
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Answer: Answer: how to explain the sample size discrepancy in UCSC Xena
3 days ago by i.sudbery 22k
12
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1
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4.0k
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Answer: Answer: Linear regression vs DESeq2 models for DEG analysis
3 days ago by i.sudbery 22k
0
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0
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5.3k
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Comment: Comment: Help with Model
6 days ago by i.sudbery 22k
0
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1
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5.3k
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Answer: Answer: Help with Model
7 days ago by i.sudbery 22k
0
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1
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7.7k
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Comment: Comment: miRNA low mapping ratings
7 days ago by i.sudbery 22k
0
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1
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7.7k
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Comment: Comment: miRNA low mapping ratings
7 days ago by i.sudbery 22k
0
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1
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7.7k
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Comment: Comment: miRNA low mapping ratings
8 days ago by i.sudbery 22k
0
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1
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7.7k
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Comment: Comment: miRNA low mapping ratings
8 days ago by i.sudbery 22k
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0
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7.4k
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Comment: Comment: RNAseq requirements: Biological and Technical replicates
21 days ago by i.sudbery 22k
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0
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8.7k
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Comment: Comment: High percentage of intronic/intergenic reads in RNA-seq
26 days ago by i.sudbery 22k
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0
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11k
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Answer: Answer: FDR correction can sometimes lie to you!
6 weeks ago by i.sudbery 22k
0
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0
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651
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Comment: Comment: UMI introduction and deduplication with SMARTer-Seq
8 weeks ago by i.sudbery 22k
6
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2
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1.3k
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Answer: Answer: Does edgeR supports random effects?
9 weeks ago by i.sudbery 22k
1
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0
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635
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Comment: Comment: Plotting of genes using tpm matrix
10 weeks ago by i.sudbery 22k
2
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1
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635
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Comment: Comment: Plotting of genes using tpm matrix
11 weeks ago by i.sudbery 22k
0
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0
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461
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Comment: Comment: Identification problem of IDE-8 cell on culture with inverted microscope
11 weeks ago by i.sudbery 22k
2
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1
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672
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Comment: Comment: Understanding NCBI vs ENA data
11 weeks ago by i.sudbery 22k
0
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0
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718
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Comment: Comment: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be
12 weeks ago by i.sudbery 22k
0
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1
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718
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Answer: Answer: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be
12 weeks ago by i.sudbery 22k
0
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0
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740
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Answer: Answer: RNA-seq: TPM batch effect correction
3 months ago by i.sudbery 22k
3
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0
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872
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Comment: Comment: Can I use removeBatchEffect() before performing DEG analysis in bulk RNA-seq wit
3 months ago by i.sudbery 22k
2
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1
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856
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Answer: Answer: DeSeq2 how to change design matrix when samples are exclusive: error in “Model m
updated 3 months ago by 89k • written 3 months ago by 22k
2
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1
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872
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Comment: Comment: Can I use removeBatchEffect() before performing DEG analysis in bulk RNA-seq wit
3 months ago by i.sudbery 22k
0
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0
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615
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Comment: Comment: Should matched samples (not paired) be included in the DESeq2 design model?
3 months ago by i.sudbery 22k
0
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1
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615
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Answer: Answer: Should matched samples (not paired) be included in the DESeq2 design model?
3 months ago by i.sudbery 22k
4
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1
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763
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Answer: Answer: Isoform analysis after quantification with Salmon/Star
3 months ago by i.sudbery 22k
2
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1
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885
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Answer: Answer: pysam header and body
4 months ago by i.sudbery 22k
1
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0
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782
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Comment: Comment: Both up- and down-regulated gene sets return the same GO pathway analysis result
4 months ago by i.sudbery 22k
2
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1
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782
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Answer: Answer: Both up- and down-regulated gene sets return the same GO pathway analysis result
4 months ago by i.sudbery 22k
0
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1
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1.7k
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Comment: Comment: Trim CDS to ORF
4 months ago by i.sudbery 22k
0
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1
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1.7k
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Answer: Answer: Trim CDS to ORF
4 months ago by i.sudbery 22k
2
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1
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1.4k
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Comment: Comment: RNASeq bulk transcriptomics analysis
4 months ago by i.sudbery 22k
0
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0
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190k
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Comment: Comment: Fold change - a final explanation
4 months ago by i.sudbery 22k
1
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0
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1.0k
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Answer: Answer: Pooling Replicates in Omics Analysis: Trade-off Between Cost and Data Robustness
4 months ago by i.sudbery 22k
0
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0
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964
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Answer: Answer: miRNA alignment and count generation
5 months ago by i.sudbery 22k
2
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1
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1.2k
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Comment: Comment: Methods for directional pathway analysis of DEGs?
5 months ago by i.sudbery 22k
1
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0
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488
views
Answer: Answer: Getting sequences fragments using pysam
5 months ago by i.sudbery 22k
1
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1
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693
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Answer: Answer: MULTIQC for miRNAseq data
6 months ago by i.sudbery 22k
1
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0
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594
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Answer: Answer: Tools for clustering genes rather than samples for bulk RNA-seq
6 months ago by i.sudbery 22k
0
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0
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2.3k
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Comment: Comment: Reproducibility Crisis
6 months ago by i.sudbery 22k
2
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1
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2.3k
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Comment: Comment: Reproducibility Crisis
6 months ago by i.sudbery 22k
3
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0
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2.3k
views
Answer: Answer: Reproducibility Crisis
6 months ago by i.sudbery 22k
1
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0
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1.1k
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Comment: Comment: Absolute vs. differential gene expression - which analysis is more informative?
6 months ago by i.sudbery 22k
0
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1
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915
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Answer: Answer: Using UMI-tools on Smart-seq3 RNA-Seq data
6 months ago by i.sudbery 22k
0
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1
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11k
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Comment: Comment: Extract UMIs using UMI-tools
6 months ago by i.sudbery 22k
0
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0
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786
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Answer: Answer: Higher number of reads mapped to transcriptome vs genome in star mapping
6 months ago by i.sudbery 22k
0
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0
replies
786
views
Comment: Comment: Higher number of reads mapped to transcriptome vs genome in star mapping
6 months ago by i.sudbery 22k
0
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1
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786
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Comment: Comment: Higher number of reads mapped to transcriptome vs genome in star mapping
6 months ago by i.sudbery 22k
0
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0
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514
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Answer: Answer: Co-expression analysis of miRNAs and target mRNAs
6 months ago by i.sudbery 22k
3
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0
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694
views
Answer: Answer: Why do RNAseq reads align to non-gene regions of the bacterial genome?
6 months ago by i.sudbery 22k
1,719 results • Page 1 of 35
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