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3
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2.5k
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Answer: Answer: Reproducibility Crisis
7 months ago by i.sudbery 22k
1
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0
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1.3k
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Comment: Comment: Absolute vs. differential gene expression - which analysis is more informative?
7 months ago by i.sudbery 22k
0
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1
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1.2k
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Answer: Answer: Using UMI-tools on Smart-seq3 RNA-Seq data
8 months ago by i.sudbery 22k
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1
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12k
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Comment: Comment: Extract UMIs using UMI-tools
8 months ago by i.sudbery 22k
0
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0
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952
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Answer: Answer: Higher number of reads mapped to transcriptome vs genome in star mapping
8 months ago by i.sudbery 22k
0
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0
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952
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Comment: Comment: Higher number of reads mapped to transcriptome vs genome in star mapping
8 months ago by i.sudbery 22k
0
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1
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952
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Comment: Comment: Higher number of reads mapped to transcriptome vs genome in star mapping
8 months ago by i.sudbery 22k
0
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0
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643
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Answer: Answer: Co-expression analysis of miRNAs and target mRNAs
8 months ago by i.sudbery 22k
3
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796
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Answer: Answer: Why do RNAseq reads align to non-gene regions of the bacterial genome?
8 months ago by i.sudbery 22k
0
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1
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1.1k
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Comment: Comment: Dealing with UMIs
8 months ago by i.sudbery 22k
0
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0
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1.0k
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Comment: Comment: Transcriptome Variant Calling Mapping to Introns
8 months ago by i.sudbery 22k
1
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1.0k
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Comment: Comment: Transcriptome Variant Calling Mapping to Introns
8 months ago by i.sudbery 22k
0
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0
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1.4k
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Comment: Comment: Multiple factors in DESeq2
8 months ago by i.sudbery 22k
3
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2
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1.4k
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Answer: Answer: Multiple factors in DESeq2
8 months ago by i.sudbery 22k
3
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0
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1.4k
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Answer: Answer: Do you agree with the practice of combing TCGA with GTEx?
8 months ago by i.sudbery 22k
0
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0
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889
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Comment: Comment: cannot install GO.db in windows
8 months ago by i.sudbery 22k
1
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1
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827
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Answer: Answer: How to predict targets of miRNAs with indels in the seed region?
9 months ago by i.sudbery 22k
1
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1
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1.8k
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Comment: Comment: Regex in umi-tools doesn't identify pattern in non-beginning positions
9 months ago by i.sudbery 22k
1
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1
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1.8k
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Comment: Comment: Regex in umi-tools doesn't identify pattern in non-beginning positions
9 months ago by i.sudbery 22k
2
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1
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1.8k
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Answer: Answer: Regex in umi-tools doesn't identify pattern in non-beginning positions
9 months ago by i.sudbery 22k
2
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0
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1.0k
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Answer: Answer: Dimensionality reduction using RNA and protein expression
9 months ago by i.sudbery 22k
0
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0
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960
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Answer: Answer: Should I Use p-value or Adjusted p-value for Differential Methylation Analysis (
9 months ago by i.sudbery 22k
0
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0
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815
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Answer: Answer: Data Normalization of RNAseq gene expression
9 months ago by i.sudbery 22k
1
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0
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975
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Answer: Answer: GTF file generated by stringtie merge has two source ensemble and stringtie
9 months ago by i.sudbery 22k
1
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0
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975
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Comment: Comment: GTF file generated by stringtie merge has two source ensemble and stringtie
9 months ago by i.sudbery 22k
2
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1
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1.6k
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Answer: Answer: DESeq2 analysis
9 months ago by i.sudbery 22k
0
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1
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4.3k
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Comment: Comment: How do you estimate time to complete a project or task?
9 months ago by i.sudbery 22k
0
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1
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900
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Answer: Answer: Umi_tools regex blank output
9 months ago by i.sudbery 22k
2
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1
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4.3k
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Comment: Comment: How do you estimate time to complete a project or task?
updated 9 months ago by 45k • written 9 months ago by 22k
0
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1
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1.1k
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Comment: Comment: Unannotated reads through STAR
9 months ago by i.sudbery 22k
0
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1
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1.1k
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Answer: Answer: Unannotated reads through STAR
9 months ago by i.sudbery 22k
0
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0
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1.1k
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Comment: Comment: Estimating mRNA Half-Life from Single Time Point Data Using mRNA/Ribo-seq Expres
9 months ago by i.sudbery 22k
1
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2
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1.1k
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Comment: Comment: Estimating mRNA Half-Life from Single Time Point Data Using mRNA/Ribo-seq Expres
9 months ago by i.sudbery 22k
2
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1
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830
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Answer: Answer: Reading location of a feature of a miRNA entry in miRBase in EMBL format
9 months ago by i.sudbery 22k
0
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2
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1.1k
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Answer: Answer: Estimating mRNA Half-Life from Single Time Point Data Using mRNA/Ribo-seq Expres
9 months ago by i.sudbery 22k
2
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0
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1.8k
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Answer: Answer: Use of Pval v.s. Padj Statistic in Pre-Ranked GSEA Analysis
9 months ago by i.sudbery 22k
0
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1
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2.6k
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Comment: Comment: chromHMM annotations
10 months ago by i.sudbery 22k
0
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1
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2.6k
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Comment: Comment: chromHMM annotations
10 months ago by i.sudbery 22k
0
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1
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1.5k
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Comment: Comment: Issue with CIBERSORTx Error 139
10 months ago by i.sudbery 22k
2
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1
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931
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Answer: Answer: RNA-seq combined treatment interaction experiment design
10 months ago by i.sudbery 22k
1
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0
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2.2k
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Comment: Comment: DESeq2: error in checkFullRank(modelMatrix)
10 months ago by i.sudbery 22k
0
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0
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1.2k
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Comment: Comment: Convert miRNA_ID to GENE-symbol
10 months ago by i.sudbery 22k
1
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1
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1.3k
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Comment: Comment: Why only C > A,T,G and T > A,G,C mutations typically considered in 96 SBS contex
10 months ago by i.sudbery 22k
1
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1
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1.3k
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Comment: Comment: Why only C > A,T,G and T > A,G,C mutations typically considered in 96 SBS contex
10 months ago by i.sudbery 22k
0
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0
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1.2k
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Comment: Comment: Convert miRNA_ID to GENE-symbol
10 months ago by i.sudbery 22k
1
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0
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2.1k
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Comment: Comment: Premade RNA-seq pipeline or custom
10 months ago by i.sudbery 22k
2
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0
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653
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Answer: Answer: Bulk-RNA-Seq integrate control samples.
10 months ago by i.sudbery 22k
3
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0
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2.1k
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Answer: Answer: Premade RNA-seq pipeline or custom
10 months ago by i.sudbery 22k
1
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0
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870
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Answer: Answer: Biomart doesn't output ALL uniprot IDs
10 months ago by i.sudbery 22k
1
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0
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1.4k
views
Comment: Comment: UMI collapsing in single cell
10 months ago by i.sudbery 22k
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