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Comment: C: CellRanger scRNA .mtx only uses 15% of reads in .bam?
5.6 years ago by i.sudbery 22k
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2
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4.5k
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Answer: A: CellRanger scRNA .mtx only uses 15% of reads in .bam?
5.6 years ago by i.sudbery 22k
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1
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3.6k
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Comment: C: filter before differential expression analysis
5.6 years ago by i.sudbery 22k
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3.6k
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Answer: A: filter before differential expression analysis
updated 5.6 years ago by 45k • written 5.6 years ago by 22k
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5.6k
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Comment: C: Expression cutoff for UMI
5.6 years ago by i.sudbery 22k
5
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1
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5.6k
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Answer: A: Expression cutoff for UMI
5.6 years ago by i.sudbery 22k
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2.3k
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Answer: A: Book recommendation for starting and advancing in Bioinformatics
5.7 years ago by i.sudbery 22k
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1
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2.8k
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Comment: C: Non-overlapping exon set for exon counting (Illumina RNA-seq)
5.7 years ago by i.sudbery 22k
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955
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Answer: A: Statistically overrepresented gene types from Differentially expressed genes.
5.7 years ago by i.sudbery 22k
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2.8k
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Answer: A: Non-overlapping exon set for exon counting (Illumina RNA-seq)
5.7 years ago by i.sudbery 22k
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1.9k
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Comment: C: Correlation between gene expression (RNAseq) and RRBS methylation data
5.7 years ago by i.sudbery 22k
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1.9k
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Comment: C: Correlation between gene expression (RNAseq) and RRBS methylation data
5.7 years ago by i.sudbery 22k
0
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1
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1.9k
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Answer: A: Correlation between gene expression (RNAseq) and RRBS methylation data
5.7 years ago by i.sudbery 22k
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6.5k
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Comment: C: What is the minimal recommended cutoff for fold change for such variable samples
5.7 years ago by i.sudbery 22k
5
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1
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6.5k
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Answer: A: What is the minimal recommended cutoff for fold change for such variable samples
5.7 years ago by i.sudbery 22k
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4.0k
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Comment: C: How to extract 3'UTR regions
5.7 years ago by i.sudbery 22k
0
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1
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1.3k
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Answer: A: How to do if no normal control for RNA
5.7 years ago by i.sudbery 22k
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1
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5.0k
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Comment: C: How to get different outputs for kallisto on multiple samples?
5.7 years ago by i.sudbery 22k
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1
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1.4k
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Answer: A: Why 3'-UTR length is 1 or 0?
5.7 years ago by i.sudbery 22k
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1
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6.3k
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Comment: C: How to extract aligned reads that contain splice junctions from STAR
5.7 years ago by i.sudbery 22k
2
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2
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6.3k
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Answer: A: How to extract aligned reads that contain splice junctions from STAR
5.7 years ago by i.sudbery 22k
2
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1
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2.8k
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Answer: A: What is the difference between picard and picard-tools ?
5.7 years ago by i.sudbery 22k
5
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0
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16k
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Answer: Answer: RNASeq user experience with Novogene?
updated 3.0 years ago by 45k • written 5.8 years ago by 22k
5
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1
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5.0k
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Answer: A: Differential gene expression, starting from RSEM expected count values.
5.8 years ago by i.sudbery 22k
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6.8k
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Comment: C: What's your preferred pathway enrichment analysis tool after DEG analysis and wh
5.8 years ago by i.sudbery 22k
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0
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2.8k
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Comment: C: umi_tools count omitting majority of reads
5.8 years ago by i.sudbery 22k
1
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0
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858
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Answer: A: Transcriptomic data analysis
5.8 years ago by i.sudbery 22k
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1
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1.3k
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Answer: A: Comparing RNA expression between different tissue type, but same Cancer.
5.8 years ago by i.sudbery 22k
2
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1
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1.7k
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Comment: C: Can fusion transcript softwares distinguish between gene-fusions and transcript-
5.8 years ago by i.sudbery 22k
1
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1
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1.7k
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Comment: C: Can fusion transcript softwares distinguish between gene-fusions and transcript-
5.8 years ago by i.sudbery 22k
1
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1
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2.4k
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Answer: A: Downloading 3' UTR sequences for miRNA Target Prediction
5.8 years ago by i.sudbery 22k
1
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0
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1.2k
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Answer: A: Kruskal Wallis test with the same p-value for all data?
5.8 years ago by i.sudbery 22k
2
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1
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2.4k
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Comment: C: Downloading 3' UTR sequences for miRNA Target Prediction
5.8 years ago by i.sudbery 22k
6
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3.3k
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Answer: A: How are GO biological processes and pathways related?
5.8 years ago by i.sudbery 22k
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0
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2.9k
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Comment: C: wgcna network interpretation
5.8 years ago by i.sudbery 22k
2
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1
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2.9k
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Answer: A: wgcna network interpretation
5.8 years ago by i.sudbery 22k
1
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0
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2.4k
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Answer: A: Location of Genes on Chromosome
5.8 years ago by i.sudbery 22k
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0
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748
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Answer: A: Tool to link a expression pattern to treatments effects
5.8 years ago by i.sudbery 22k
1
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0
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935
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Answer: A: PTC positions in transcripts
5.8 years ago by i.sudbery 22k
1
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0
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2.4k
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Comment: C: How to identify 3'UTR region?
5.8 years ago by i.sudbery 22k
2
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1
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2.4k
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Answer: A: How to identify 3'UTR region?
5.8 years ago by i.sudbery 22k
0
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1
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2.5k
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Comment: C: Non-computational challenges in bioinformatics
5.8 years ago by i.sudbery 22k
0
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1
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2.5k
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Comment: C: Non-computational challenges in bioinformatics
5.8 years ago by i.sudbery 22k
1
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1
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2.5k
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Comment: C: Non-computational challenges in bioinformatics
5.8 years ago by i.sudbery 22k
4
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1
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2.5k
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Comment: C: Non-computational challenges in bioinformatics
5.8 years ago by i.sudbery 22k
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13k
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Comment: C: How to convert transcript level TPM to gene level TPM ?
5.8 years ago by i.sudbery 22k
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3.2k
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Comment: C: How to create a proper design matrix/contrast matrix for methylation 850k analys
5.8 years ago by i.sudbery 22k
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0
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3.2k
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Answer: A: How to create a proper design matrix/contrast matrix for methylation 850k analys
5.8 years ago by i.sudbery 22k
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0
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1.1k
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Comment: C: convert probability to p-value
5.8 years ago by i.sudbery 22k
1
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0
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1.1k
views
Comment: C: convert probability to p-value
5.8 years ago by i.sudbery 22k
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