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Comment: Comment: UMI collapsing in single cell
10 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Batch correction of two RNA-Seq data sets
11 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Batch correction of two RNA-Seq data sets
11 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Batch correction of two RNA-Seq data sets
11 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Batch correction of two RNA-Seq data sets
11 months ago by i.sudbery 22k
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1.5k
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Answer: Answer: What laptop specifications should I consider as a Bioinformatics PhD student wit
11 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
11 months ago by i.sudbery 22k
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2.0k
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Answer: Answer: Transcript coverage 3' bias. Is it really that determining?
11 months ago by i.sudbery 22k
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1.4k
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Comment: Comment: Removing gDNA contamination from RNA seq data
11 months ago by i.sudbery 22k
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1.9k
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Comment: Comment: What should I do if death cell counts and types biologically important in my sin
11 months ago by i.sudbery 22k
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2.7k
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Comment: Comment: High Detection of Duplication in RNAseq dataset
11 months ago by i.sudbery 22k
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1.6k
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Answer: Answer: Quantify miRNAs from whole transcriptome library (single end, TruSeq, 100bp)
11 months ago by i.sudbery 22k
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1.6k
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Comment: Comment: Quantify miRNAs from whole transcriptome library (single end, TruSeq, 100bp)
11 months ago by i.sudbery 22k
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0
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817
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Answer: Answer: comparing STARsolo UMI-based directional deduplication vs umi-tools?
11 months ago by i.sudbery 22k
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1.1k
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Answer: Answer: model interaction in DeSeq2 with >1K samples
11 months ago by i.sudbery 22k
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955
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Answer: Answer: How Can Pathway Analysis Methods Account for Genes with Different Activation Rol
11 months ago by i.sudbery 22k
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1.5k
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Comment: Comment: Difficulties to assess bulk RNA-seq results
11 months ago by i.sudbery 22k
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1.5k
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Answer: Answer: Difficulties to assess bulk RNA-seq results
12 months ago by i.sudbery 22k
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2.2k
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Answer: Answer: DESeq2: error in checkFullRank(modelMatrix)
12 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
12 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
12 months ago by i.sudbery 22k
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2.0k
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
12 months ago by i.sudbery 22k
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1.0k
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Comment: Comment: Biostatistics
updated 12 months ago by 45k • written 12 months ago by 22k
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981
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
12 months ago by i.sudbery 22k
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1
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981
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
12 months ago by i.sudbery 22k
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1.3k
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
12 months ago by i.sudbery 22k
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1.3k
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
12 months ago by i.sudbery 22k
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1
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2.9k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
12 months ago by i.sudbery 22k
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1
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2.9k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
12 months ago by i.sudbery 22k
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1
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2.9k
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Answer: Answer: dedup STAR transcriptome file using umi_tools
12 months ago by i.sudbery 22k
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0
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1.8k
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
12 months ago by i.sudbery 22k
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0
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980
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Answer: Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input
12 months ago by i.sudbery 22k
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1
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3.1k
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Comment: Comment: Question about edgeR p-values/FDR values
12 months ago by i.sudbery 22k
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3.1k
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Answer: Answer: Question about edgeR p-values/FDR values
12 months ago by i.sudbery 22k
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0
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1.1k
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Comment: Comment: Has this sequence really more then 70k perfect matches in the human genome?
12 months ago by i.sudbery 22k
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1
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1.1k
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Answer: Answer: Has this sequence really more then 70k perfect matches in the human genome?
12 months ago by i.sudbery 22k
0
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0
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724
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Comment: Comment: error in DESeq2 Determines differentially expressed features from count tables
13 months ago by i.sudbery 22k
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0
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2.3k
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
13 months ago by i.sudbery 22k
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2
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2.3k
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Answer: Answer: How the field has changes for the last 5 years, and 25 years (up to 2024)
13 months ago by i.sudbery 22k
4
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1
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1.7k
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Answer: Answer: Why Are Transcripts Differentially Expressed but Not Genes in RNA-seq Analysis?
13 months ago by i.sudbery 22k
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1
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1.0k
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Answer: Answer: Outlier after DEseq2 in meta-analysis
13 months ago by i.sudbery 22k
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0
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1.2k
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Answer: Answer: Questions Regarding Normalization and Standardization in RNA-seq Differential An
13 months ago by i.sudbery 22k
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0
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2.7k
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Comment: Comment: UMItools dedup deduplication taking too much time + RAM
13 months ago by i.sudbery 22k
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1
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1.7k
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Comment: Comment: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
13 months ago by i.sudbery 22k
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2
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1.7k
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Answer: Answer: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
13 months ago by i.sudbery 22k
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0
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2.9k
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
13 months ago by i.sudbery 22k
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1
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2.9k
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Answer: Answer: The Evolution of NGS: What’s New and What’s Next?
13 months ago by i.sudbery 22k
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0
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2.9k
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
13 months ago by i.sudbery 22k
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1
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813
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Answer: Answer: Significant p values with non significant looking figures
14 months ago by i.sudbery 22k
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0
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1.2k
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Comment: Comment: RNASeq Analysis: data from different library
14 months ago by i.sudbery 22k
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