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Comment: Comment: What should I do if death cell counts and types biologically important in my sin
9 months ago by i.sudbery 22k
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Comment: Comment: High Detection of Duplication in RNAseq dataset
9 months ago by i.sudbery 22k
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Answer: Answer: Quantify miRNAs from whole transcriptome library (single end, TruSeq, 100bp)
9 months ago by i.sudbery 22k
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Comment: Comment: Quantify miRNAs from whole transcriptome library (single end, TruSeq, 100bp)
9 months ago by i.sudbery 22k
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715
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Answer: Answer: comparing STARsolo UMI-based directional deduplication vs umi-tools?
9 months ago by i.sudbery 22k
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984
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Answer: Answer: model interaction in DeSeq2 with >1K samples
9 months ago by i.sudbery 22k
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835
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Answer: Answer: How Can Pathway Analysis Methods Account for Genes with Different Activation Rol
9 months ago by i.sudbery 22k
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Comment: Comment: Difficulties to assess bulk RNA-seq results
10 months ago by i.sudbery 22k
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1.3k
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Answer: Answer: Difficulties to assess bulk RNA-seq results
10 months ago by i.sudbery 22k
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Answer: Answer: DESeq2: error in checkFullRank(modelMatrix)
10 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
10 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
10 months ago by i.sudbery 22k
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
10 months ago by i.sudbery 22k
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929
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Comment: Comment: Biostatistics
updated 10 months ago by 45k • written 10 months ago by 22k
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867
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
10 months ago by i.sudbery 22k
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867
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
10 months ago by i.sudbery 22k
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1.2k
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
10 months ago by i.sudbery 22k
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1.2k
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
11 months ago by i.sudbery 22k
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2.6k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
11 months ago by i.sudbery 22k
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2.6k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
11 months ago by i.sudbery 22k
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2.6k
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Answer: Answer: dedup STAR transcriptome file using umi_tools
11 months ago by i.sudbery 22k
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1.7k
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
11 months ago by i.sudbery 22k
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835
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Answer: Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input
11 months ago by i.sudbery 22k
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1
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2.7k
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Comment: Comment: Question about edgeR p-values/FDR values
11 months ago by i.sudbery 22k
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2.7k
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Answer: Answer: Question about edgeR p-values/FDR values
11 months ago by i.sudbery 22k
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1.0k
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Comment: Comment: Has this sequence really more then 70k perfect matches in the human genome?
11 months ago by i.sudbery 22k
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1.0k
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Answer: Answer: Has this sequence really more then 70k perfect matches in the human genome?
11 months ago by i.sudbery 22k
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0
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639
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Comment: Comment: error in DESeq2 Determines differentially expressed features from count tables
11 months ago by i.sudbery 22k
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2.2k
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
11 months ago by i.sudbery 22k
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2
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2.2k
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Answer: Answer: How the field has changes for the last 5 years, and 25 years (up to 2024)
11 months ago by i.sudbery 22k
4
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1
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1.5k
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Answer: Answer: Why Are Transcripts Differentially Expressed but Not Genes in RNA-seq Analysis?
11 months ago by i.sudbery 22k
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1
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926
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Answer: Answer: Outlier after DEseq2 in meta-analysis
11 months ago by i.sudbery 22k
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1.1k
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Answer: Answer: Questions Regarding Normalization and Standardization in RNA-seq Differential An
11 months ago by i.sudbery 22k
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0
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2.5k
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Comment: Comment: UMItools dedup deduplication taking too much time + RAM
12 months ago by i.sudbery 22k
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1.6k
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Comment: Comment: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
12 months ago by i.sudbery 22k
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1.6k
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Answer: Answer: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
12 months ago by i.sudbery 22k
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2.8k
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
12 months ago by i.sudbery 22k
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2.8k
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Answer: Answer: The Evolution of NGS: What’s New and What’s Next?
12 months ago by i.sudbery 22k
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2.8k
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
12 months ago by i.sudbery 22k
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1
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739
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Answer: Answer: Significant p values with non significant looking figures
12 months ago by i.sudbery 22k
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0
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1.1k
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Comment: Comment: RNASeq Analysis: data from different library
12 months ago by i.sudbery 22k
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1
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1.1k
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Comment: Comment: RNASeq Analysis: data from different library
12 months ago by i.sudbery 22k
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1
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1.2k
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Comment: Comment: Poor dispersion fit in DESeq2
12 months ago by i.sudbery 22k
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1.2k
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Comment: Comment: Dispersion fit - thoughts?
12 months ago by i.sudbery 22k
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4.8k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
12 months ago by i.sudbery 22k
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4.8k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
12 months ago by i.sudbery 22k
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0
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4.8k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
12 months ago by i.sudbery 22k
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0
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1.1k
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Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
12 months ago by i.sudbery 22k
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1
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1.1k
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Answer: Answer: Multiple SRR files correspond to the same GSM in GEO
12 months ago by i.sudbery 22k
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1
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1.1k
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Answer: Answer: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
12 months ago by i.sudbery 22k
1,719 results • Page 3 of 35
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