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Comment: Comment: New versions of the same transcripts ID may have different exons coordinates??
17 months ago by i.sudbery 22k
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Answer: Answer: Extracting UMIs from NEXTFLEX Small RNA-Seq reads using UMI_tools
17 months ago by i.sudbery 22k
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1.4k
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Comment: Comment: New versions of the same transcripts ID may have different exons coordinates??
17 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Looking for clarification of .vcf output from variant calling
17 months ago by i.sudbery 22k
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2.8k
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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
17 months ago by i.sudbery 22k
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2.8k
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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
17 months ago by i.sudbery 22k
0
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1
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2.8k
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Answer: Answer: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
17 months ago by i.sudbery 22k
1
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2.8k
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Comment: Comment: Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
updated 17 months ago by 45k • written 17 months ago by 22k
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883
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Comment: Comment: Bias in FDR distribution
17 months ago by i.sudbery 22k
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1.1k
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Answer: Answer: Does it make sense to use scRNAseq for this experiment?
17 months ago by i.sudbery 22k
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1.9k
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Answer: Answer: How do you make an original contribution to knowledge in applied bioinformatics?
17 months ago by i.sudbery 22k
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2.1k
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Comment: Comment: PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while ad
17 months ago by i.sudbery 22k
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984
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Comment: Comment: Combining microarray, RNA Seq, whole & exome sequencing
17 months ago by i.sudbery 22k
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1.0k
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Comment: Comment: How to Split FASTQ File by UMI Indices into Multiple Files
17 months ago by i.sudbery 22k
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3.2k
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
17 months ago by i.sudbery 22k
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22k
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Comment: Comment: log2 fold change in RNA-seq analysis
18 months ago by i.sudbery 22k
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6.0k
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
18 months ago by i.sudbery 22k
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6.0k
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
18 months ago by i.sudbery 22k
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1
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1.4k
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Answer: Answer: How do we do quantification using stringtie merge option for all the merged samp
18 months ago by i.sudbery 22k
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916
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Answer: Answer: How to interpret this plotMDS of three disease clusters?
18 months ago by i.sudbery 22k
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6.0k
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
18 months ago by i.sudbery 22k
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1.1k
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Comment: Comment: Problem with Calling Variants from RNA-Seq data
18 months ago by i.sudbery 22k
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989
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Answer: Answer: Biomart issue, why so few 3'utrs?
18 months ago by i.sudbery 22k
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989
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Comment: Comment: Biomart issue, why so few 3'utrs?
18 months ago by i.sudbery 22k
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Answer: Answer: UMI-Tools knee-method has great influence on the results of white list
18 months ago by i.sudbery 22k
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3.2k
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
18 months ago by i.sudbery 22k
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1.6k
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Comment: Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
18 months ago by i.sudbery 22k
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1
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3.2k
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
18 months ago by i.sudbery 22k
1
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1
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3.2k
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
18 months ago by i.sudbery 22k
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1
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3.2k
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
18 months ago by i.sudbery 22k
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1
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2.8k
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Answer: Answer: Understanding STAR output (Aligned.out.sam file)
18 months ago by i.sudbery 22k
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1
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1.6k
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Comment: Comment: How does gene length effect the number of reads mapped
18 months ago by i.sudbery 22k
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1.6k
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Comment: Comment: How does gene length effect the number of reads mapped
18 months ago by i.sudbery 22k
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1.6k
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Answer: Answer: How goes gene length effect the number of reads mapped
18 months ago by i.sudbery 22k
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6.1k
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Answer: Answer: What purposes can TPM values be used for?
18 months ago by i.sudbery 22k
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573
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Comment: Comment: Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
18 months ago by i.sudbery 22k
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6.5k
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Comment: Comment: NGS forensics: how to know if data is fabricated
18 months ago by i.sudbery 22k
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3.0k
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Comment: Comment: Low mapping rate with Salmon
18 months ago by i.sudbery 22k
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1
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6.5k
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Comment: Comment: NGS forensics: how to know if data is fabricated
18 months ago by i.sudbery 22k
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1.3k
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Comment: Comment: ChIP-seq datasets: input samples omitted?
18 months ago by i.sudbery 22k
1
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1
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779
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
18 months ago by i.sudbery 22k
1
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1
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6.5k
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Comment: Comment: NGS forensics: how to know if data is fabricated
18 months ago by i.sudbery 22k
1
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6.5k
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Comment: Comment: NGS forensics: how to know if data is fabricated
18 months ago by i.sudbery 22k
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1
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3.0k
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Comment: Comment: Low mapping rate with Salmon
19 months ago by i.sudbery 22k
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1.6k
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Comment: Comment: what is the purpose of indexing the reference genome (Kallisto)
19 months ago by i.sudbery 22k
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6.0k
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
19 months ago by i.sudbery 22k
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1
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3.0k
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Comment: Comment: Low mapping rate with Salmon
19 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Marking duplicates using UMIs
19 months ago by i.sudbery 22k
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1.8k
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Comment: Comment: Marking duplicates using UMIs
19 months ago by i.sudbery 22k
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991
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Answer: Answer: Trouble understanding seemingly contradicting results of GSE analysis (contradic
19 months ago by i.sudbery 22k
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