Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
1
reply
770
views
Answer: Answer: correlation plot, FDR value
9 months ago by i.sudbery 19k
3
votes
1
reply
968
views
Answer: Answer: How reproducible is transcript quantification through salmon?
9 months ago by i.sudbery 19k
0
votes
1
reply
1.2k
views
Answer: Answer: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by i.sudbery 19k
0
votes
0
replies
465
views
Answer: Answer: Making use of relative density of genomic features between gene sets
10 months ago by i.sudbery 19k
2
votes
1
reply
1.9k
views
Answer: Answer: Would solving many Rosalind problems show your ability for this field in job-w
10 months ago by i.sudbery 19k
1
vote
0
replies
503
views
Answer: Answer: Do rna SRA files contain introns ?
10 months ago by i.sudbery 19k
3
votes
2
replies
992
views
Answer: Answer: Alignment of case vs. control from different origin
11 months ago by i.sudbery 19k
1
vote
1
reply
785
views
Answer: Answer: Using t test to compare z-scores from RNA expression data
11 months ago by i.sudbery 19k
2
votes
1
reply
1.2k
views
Answer: Answer: Design matrix to remove technical replicate effect
11 months ago by i.sudbery 19k
0
votes
0
replies
519
views
Answer: Answer: which options to select with UMI-tools and BCLconvert for deduplication of reads
11 months ago by i.sudbery 19k
0
votes
0
replies
862
views
Answer: Answer: Can I use umi_tools to discard cell barcodes and extract the UMI while keeping t
11 months ago by i.sudbery 19k
0
votes
0
replies
422
views
Answer: Answer: DESEQ2 FORMULAS FOR PAIRED SAMPLES
12 months ago by i.sudbery 19k
1
vote
0
replies
1.2k
views
Answer: Answer: Installing pybedtools in Windows 10
12 months ago by i.sudbery 19k
2
votes
1
reply
1.4k
views
Answer: Answer: Exon vs Transcript in featurecounts for RNA Seq
12 months ago by i.sudbery 19k
2
votes
1
reply
4.3k
views
Answer: Answer: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by i.sudbery 19k
13
votes
0
replies
988
views
Answer: Answer: Pooling animal samples to a lower number of replicates vs. sequencing a subgroup
12 months ago by i.sudbery 19k
1
vote
1
reply
775
views
Answer: Answer: Why can’t we have full-length transcripts with droplet-based technologies ?
13 months ago by i.sudbery 19k
2
votes
1
reply
965
views
Answer: Answer: PCA in gene expression
13 months ago by i.sudbery 19k
0
votes
0
replies
975
views
Answer: Answer: Benjamini–Hochberg correction, FDR in genes' expressions
13 months ago by i.sudbery 19k
2
votes
0
replies
2.1k
views
Answer: Answer: gtf2bed not converting to bed
13 months ago by i.sudbery 19k
0
votes
1
reply
944
views
Answer: Answer: Tissue-dependent usage of exons
13 months ago by i.sudbery 19k
2
votes
1
reply
505
views
Answer: Answer: Could I consider an ENCODE experiment with two library as two replicates for dif
13 months ago by i.sudbery 19k
2
votes
0
replies
1.5k
views
Answer: Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
13 months ago by i.sudbery 19k
6
votes
1
reply
968
views
Answer: Answer: kallisto -s o error
13 months ago by i.sudbery 19k
0
votes
1
reply
1.1k
views
Answer: Answer: Problem with universe argument in enrichKEGG
14 months ago by i.sudbery 19k
3
votes
1
reply
694
views
Answer: Answer: Differential expression vs tissue specific expression
14 months ago by i.sudbery 19k
7
votes
1
reply
6.8k
views
Answer: Answer: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
14 months ago by i.sudbery 19k
1
vote
0
replies
1.1k
views
Answer: Answer: Comparing log2-fold changes to find elements with virtually the same log2-fold c
14 months ago by i.sudbery 19k
1
vote
1
reply
669
views
Answer: Answer: how to decide the if the IDR result is good or not
14 months ago by i.sudbery 19k
6
votes
0
replies
911
views
Answer: Answer: Can FPKM data sets be of any use or are they trash?
14 months ago by i.sudbery 19k
2
votes
1
reply
776
views
Answer: Answer: Do I need to adjust the pvalue if I am only going to test one gene from omics da
14 months ago by i.sudbery 19k
2
votes
1
reply
1.0k
views
Answer: Answer: High downstream gene expression
15 months ago by i.sudbery 19k
2
votes
0
replies
756
views
Answer: Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
15 months ago by i.sudbery 19k
2
votes
0
replies
697
views
Answer: Answer: isoform compostion (psi) question
15 months ago by i.sudbery 19k
7
votes
0
replies
2.1k
views
Answer: Answer: Hugely different results between edgeR and DESeq2
15 months ago by i.sudbery 19k
2
votes
0
replies
2.5k
views
Answer: Answer: STAR aligner can't map too short reads
15 months ago by i.sudbery 19k
1
vote
1
reply
1.4k
views
Answer: Answer: UMI-tools deduplication of reads with UMI at the start of the line
15 months ago by i.sudbery 19k
1
vote
1
reply
1.2k
views
Answer: Answer: Removing umi split off as a separate fastq (RNA-seq)
15 months ago by i.sudbery 19k
1
vote
1
reply
587
views
Answer: Answer: How to perform comparison between two differentially expressed data
16 months ago by i.sudbery 19k
1
vote
0
replies
728
views
Answer: Answer: Non-adjusted p-value used in publication
16 months ago by i.sudbery 19k
1
vote
1
reply
2.2k
views
Answer: Answer: How to decide when to have local hardware vs cloud computing?
16 months ago by i.sudbery 19k
2
votes
1
reply
472
views
Answer: Answer: how to deal with strong sample heterogenous effects in RNAseq
updated 16 months ago by 43k • written 16 months ago by 19k
0
votes
0
replies
646
views
Answer: Answer: Can I use GTEx RNA-seq gene read data compare the gene expression difference bet
16 months ago by i.sudbery 19k
2
votes
0
replies
2.2k
views
Answer: Answer: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
17 months ago by i.sudbery 19k
5
votes
0
replies
616
views
Answer: Answer: Which one do you recommend for the problem with the smaller number of normal sam
17 months ago by i.sudbery 19k
2
votes
1
reply
840
views
Answer: Answer: Evaluating RNASeq counts distribution
17 months ago by i.sudbery 19k
2
votes
1
reply
945
views
Answer: Answer: What does PCA results signify?
17 months ago by i.sudbery 19k
4
votes
2
replies
1.3k
views
Answer: Answer: Are package downgrades a necessary evil in Conda?
17 months ago by i.sudbery 19k
4
votes
2
replies
1.8k
views
Answer: Answer: UMI deduplication and output
17 months ago by i.sudbery 19k
2
votes
1
reply
9.2k
views
Answer: Answer: Laptops for bioinformatics
18 months ago by i.sudbery 19k
562 results • Page 2 of 12
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6