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Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
7 months ago by Asaf 10k
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861
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Answer: Answer: Criteria for a good heatmap
updated 9 months ago by 82k • written 9 months ago by 10k
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949
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Answer: Answer: How to best represent three biological replicates of single tissue sample?
9 months ago by Asaf 10k
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449
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Answer: Answer: Find the most similar regions of two dna sequences
9 months ago by Asaf 10k
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791
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Answer: Answer: Which KEGG Database to use for DIAMOND annotation of predicted gene coding regio
9 months ago by Asaf 10k
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384
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Answer: Answer: E. coli K-12 substr. MG1655
10 months ago by Asaf 10k
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632
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Answer: Answer: Nextflow: how to filter a channel by a list? (DLS2)
10 months ago by Asaf 10k
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1.2k
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Answer: Answer: Deseq2 questions
9 months ago by Asaf 10k
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748
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Answer: Answer: Best pipeline / resources / tools for whole genome assembly
10 months ago by Asaf 10k
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460
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Answer: Answer: bwa mem skip orientation when aligning a small subset of reads
10 months ago by Asaf 10k
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543
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Answer: Answer: DESeq2: "model matrix is not full rank"
10 months ago by Asaf 10k
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524
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Answer: Answer: Replicate
10 months ago by Asaf 10k
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713
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Answer: Answer: Using bedtools intersect with custom txt files
10 months ago by Asaf 10k
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938
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Answer: Answer: Rarefaction curve of microbiome study
10 months ago by Asaf 10k
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1.3k
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Answer: Answer: Check if blastn gene matches are of entire genes or of parts of genes
10 months ago by Asaf 10k
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475
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Answer: Answer: Putting Multiple ANOVA P-Values on Violin Plot
10 months ago by Asaf 10k
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1.1k
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Answer: Answer: OTU, ASV and Kraken2
10 months ago by Asaf 10k
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1.3k
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Answer: Answer: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs
10 months ago by Asaf 10k
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2.1k
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Answer: Answer: Most efficient way to run Diamond against a very very large database (i.e., NCBI
13 months ago by Asaf 10k
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600
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Answer: Answer: How to get a list of genes information for a pathway?
13 months ago by Asaf 10k
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430
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Answer: Answer: Database for exploring genes regulated by a given transcription factor
16 months ago by Asaf 10k
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1.2k
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Answer: Answer: bowtie2, and python script
16 months ago by Asaf 10k
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849
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Answer: Answer: What VCF file to use when using crossed mouse strains?
16 months ago by Asaf 10k
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2.5k
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Answer: Answer: Transform Data into DNA picture
17 months ago by Asaf 10k
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807
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Answer: Answer: Does anyone know how to generate a figure of the amino acid position in protein
17 months ago by Asaf 10k
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731
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Answer: Answer: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
18 months ago by Asaf 10k
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739
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Answer: Answer: labelling selected genes in volcano plot
18 months ago by Asaf 10k
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590
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Answer: Answer: 16s sequence Identification
18 months ago by Asaf 10k
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2
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2.8k
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Answer: Answer: Why we use adjusted p-value not p-value in differential gene expression analysis
18 months ago by Asaf 10k
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405
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Answer: Answer: heat map code not working
19 months ago by Asaf 10k
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1.6k
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Answer: Answer: ViennaRNA package installation in Windows
19 months ago by Asaf 10k
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1.1k
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Answer: Answer: How to read vcf files
19 months ago by Asaf 10k
3
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2
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1.1k
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Answer: Answer: nested elements in bed file using awk
19 months ago by Asaf 10k
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746
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Answer: Answer: Bedtools loop over subfolders
19 months ago by Asaf 10k
2
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893
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Answer: Answer: how to filter fasta file?
20 months ago by Asaf 10k
3
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1.4k
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Answer: Answer: Does ASVs IDs from dada2 have specific taxonomic assignments?
20 months ago by Asaf 10k
2
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1
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752
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Answer: Answer: How to find nucleoid-associated proteins in poorly described bacteria?
20 months ago by Asaf 10k
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1
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599
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Answer: Answer: Simplest solution to generate nucleotide sequence with and without a variant (al
20 months ago by Asaf 10k
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1.3k
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Answer: Answer: BLAST, set a limit to the number of hits in output
20 months ago by Asaf 10k
3
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1
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904
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Answer: Answer: what is the difference between QTL heritability and heritability?
20 months ago by Asaf 10k
2
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558
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Answer: Answer: Grep search question
20 months ago by Asaf 10k
2
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1
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731
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Answer: Answer: How to look at the global level of miRNA after performing DEA for miRNA-Seq dat
20 months ago by Asaf 10k
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0
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947
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Answer: Answer: How to split two rows in multiples row in R
20 months ago by Asaf 10k
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0
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846
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Answer: Answer: When a gene "fails" (ie doesn't express optimally or at all), does another gene
20 months ago by Asaf 10k
2
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1
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2.0k
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Answer: Answer: R - Heatmap for categorical variables (color by row)
20 months ago by Asaf 10k
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1
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813
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Answer: Answer: Feedback on Workflow
22 months ago by Asaf 10k
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0
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844
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Answer: Answer: Pearson correlation matrix heat map. The different colors represent Pearson corr
22 months ago by Asaf 10k
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1
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3.1k
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Answer: Answer: OTU Table Extraction from Phyloseq Object
23 months ago by Asaf 10k
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0
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575
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Answer: Answer: promoter analysis with DEG RNA-seq
23 months ago by Asaf 10k
1
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1
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972
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Answer: Answer: Differences between the application of function end-to-end and local in Bowtie2
23 months ago by Asaf 10k
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