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14
votes
19
replies
22k
views
8 follow
Error while running BWA mem
alignment Assembly next-gen-sequencing
updated 2.8 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
1
reply
44k
views
Comment: C: Running and Analyzing fastqc on multiple fastq files
updated 5.7 years ago by 45k • written 10.5 years ago by ▴ 220
0
votes
1
reply
44k
views
Comment: C: Running and Analyzing fastqc on multiple fastq files
updated 5.7 years ago by 45k • written 10.5 years ago by ▴ 220
0
votes
1
reply
4.7k
views
Comment: C: Ideal practice to manage huge NGS dataset/Intermediate files of Whole Genome Hum
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 220
0
votes
0
replies
8.2k
views
Comment: C: Error while demultipleaxing .bcl to .fastq files
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 220
0
votes
2
replies
8.2k
views
Comment: C: Error while demultipleaxing .bcl to .fastq files
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 220
0
votes
1
reply
6.1k
views
Comment: C: Trimmomatics parameters for WGS data quality improvement
updated 6.0 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
2
replies
30k
views
Comment: C: Marking and Removing duplicates using picard (picard-tools-1.129)
updated 6.1 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
3
replies
30k
views
Answer: A: Marking and Removing duplicates using picard (picard-tools-1.129)
updated 6.1 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
1
reply
22k
views
Comment: Comment: Error while running BWA mem
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 220
4
votes
3
replies
5.3k
views
GATK IndelRealigner issue "TOO MANY READS"
Assembly alignment genome GATK next-gen
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
3
replies
3.5k
views
Why only False Positives after VQSR ist step ?. Variant Annotation Software for combined g.vcf file !!
SNP next-gen sequencing Assembly genome
updated 7.5 years ago by 45k • written 8.8 years ago by ▴ 220
11
votes
13
replies
30k
views
Marking and Removing duplicates using picard (picard-tools-1.129)
genome next-gen-sequencing
updated 2.8 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
0
replies
5.3k
views
Comment: A: GATK IndelRealigner issue "TOO MANY READS"
9.2 years ago by ravi.uhdnis ▴ 220
0
votes
0
replies
3.6k
views
Comment: C: 'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
9.5 years ago by ravi.uhdnis ▴ 220
0
votes
0
replies
3.6k
views
Comment: C: 'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
9.5 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
3.6k
views
Comment: C: 'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
9.5 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
3.6k
views
Comment: C: 'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
9.5 years ago by ravi.uhdnis ▴ 220
0
votes
0
replies
3.6k
views
Comment: C: 'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
9.5 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
3.6k
views
Comment: C: 'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
9.5 years ago by ravi.uhdnis ▴ 220
1
vote
13
replies
3.6k
views
'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
software error
updated 9.5 years ago by 45k • written 9.5 years ago by ▴ 220
0
votes
1
reply
3.6k
views
Comment: C: 'make' command repeated message while installing vcftools on Ubuntu 14.04 LTS.
9.5 years ago by ravi.uhdnis ▴ 220
2
votes
2
replies
3.2k
views
How to compare the alignment quality of two or more mapping software
gene Assembly next-gen-sequencing alignment
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 220
2
votes
1
reply
3.9k
views
Gene specific region visualization in Alignment (.bam) or Variant calling file (.vcf) in IGV
Assembly alignment genome SNP next-gen
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 220
5
votes
5
replies
4.7k
views
Ideal practice to manage huge NGS dataset/Intermediate files of Whole Genome Human sequencing
next-gen Assembly genome alignment
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 220
0
votes
0
replies
8.2k
views
Comment: Comment: AddOrReplaceReadGroups by Picard related error "Exception in thread "main" java.
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 220
1
vote
4
replies
8.2k
views
AddOrReplaceReadGroups by Picard related error "Exception in thread "main" java.lang.OutOfMemoryError: GC overhead limit exceeded"
sequencing Assembly alignment
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 220
0
votes
0
replies
8.2k
views
Comment: C: AddOrReplaceReadGroups by Picard related error "Exception in thread "main" java.
10.1 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
3.4k
views
Comment: C: How to use multiples computational nodes/cores for Merging .fastq.gz files
10.1 years ago by ravi.uhdnis ▴ 220
7
votes
5
replies
3.4k
views
How to use multiples computational nodes/cores for Merging .fastq.gz files
Assembly next-gen-sequencing
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 220
0
votes
0
replies
8.2k
views
Comment: C: Error while demultipleaxing .bcl to .fastq files
10.1 years ago by ravi.uhdnis ▴ 220
0
votes
0
replies
8.2k
views
Comment: C: Error while demultipleaxing .bcl to .fastq files
10.1 years ago by ravi.uhdnis ▴ 220
4
votes
8
replies
8.2k
views
Error while demultipleaxing .bcl to .fastq files
sequencing genome alignment
updated 3.1 years ago by 45k • written 10.1 years ago by ▴ 220
1
vote
0
replies
3.9k
views
Answer: Answer: Whole Genome Sequencing (WGS) Alignment Quality check softwares/tools
updated 3.1 years ago by 45k • written 10.1 years ago by ▴ 220
5
votes
3
replies
3.9k
views
Whole Genome Sequencing (WGS) Alignment Quality check softwares/tools
Assembly next-gen genome alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 220
1
vote
1
reply
3.5k
views
Methods to count Number of SNPs and Novel SNPs in a Variant Calling File (.vcf) ?.
snp sequencing genome
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 220
0
votes
1
reply
45k
views
Comment: C: How Can I Count Snps In My Vcf Files?
10.2 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
45k
views
Comment: Comment: How Can I Count Snps In My Vcf Files?
10.2 years ago by ravi.uhdnis ▴ 220
0
votes
0
replies
6.1k
views
Comment: C: Trimmomatics parameters for WGS data quality improvement
10.2 years ago by ravi.uhdnis ▴ 220
3
votes
9
replies
6.1k
views
Trimmomatics parameters for WGS data quality improvement
genome next-gen-sequencing
updated 2.8 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
1
reply
6.1k
views
Answer: A: Trimmomatics parameters for WGS data quality improvement
10.2 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
6.1k
views
Comment: C: Trimmomatics parameters for WGS data quality improvement
10.2 years ago by ravi.uhdnis ▴ 220
0
votes
0
replies
15k
views
Comment: Comment: Java.Io.Filenotfoundexception ( Too Many Open Files ) :Picard Tools
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
0
votes
0
replies
3.8k
views
Comment: C: Error in IGV "Cannot find feature or locus: RP11-571E6.3"
10.3 years ago by ravi.uhdnis ▴ 220
0
votes
0
replies
22k
views
Comment: C: Error while running BWA mem
10.4 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
22k
views
Comment: C: Error while running BWA mem
10.4 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
22k
views
Comment: A: Error while running BWA mem
10.4 years ago by ravi.uhdnis ▴ 220
0
votes
1
reply
22k
views
Comment: Comment: Error while running BWA mem
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 220
8
votes
4
replies
2.4k
views
Computational power requirement to study genetic variations in Human WGS data
Assembly genome SNP next-gen-sequencing
updated 2.8 years ago by 45k • written 10.4 years ago by ▴ 220
0
votes
0
replies
30k
views
Comment: Comment: Marking and Removing duplicates using picard (picard-tools-1.129)
updated 2.8 years ago by 45k • written 10.4 years ago by ▴ 220
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