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Answer: Answer: Having a deletion coordinates how to know in which gene this is?
4.0 years ago by brunobsouzaa ▴ 840
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Comment: Comment: Individual or joint variant call ing
4.0 years ago by brunobsouzaa ▴ 840
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2
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3.1k
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Answer: Answer: Can't install AnnotationHub
4.0 years ago by brunobsouzaa ▴ 840
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1.1k
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Comment: Comment: annotating vcf with variant type and variant effect, and most harmful effect
4.0 years ago by brunobsouzaa ▴ 840
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Comment: Comment: Is it possible to detect CNV without having a reference control group/sample?
4.0 years ago by brunobsouzaa ▴ 840
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3.7k
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Comment: Comment: How we can put PASS filters on all variants in your VCF file and create a separ
4.0 years ago by brunobsouzaa ▴ 840
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Comment: Comment: DESeq2 error in design~ code
4.1 years ago by brunobsouzaa ▴ 840
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2.2k
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Comment: Comment: which tool can I use to detect CNVs?
4.1 years ago by brunobsouzaa ▴ 840
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4
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2.9k
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Ensembl VEP Plugin not working
VCF VEP
4.1 years ago by brunobsouzaa ▴ 840
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2.9k
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Answer: Answer: Ensembl VEP Plugin not working
4.1 years ago by brunobsouzaa ▴ 840
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1
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2.2k
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Comment: Comment: which tool can I use to detect CNVs?
4.1 years ago by brunobsouzaa ▴ 840
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2.9k
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Comment: Comment: Ensembl VEP Plugin not working
4.1 years ago by brunobsouzaa ▴ 840
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1.2k
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Comment: Comment: bed to vcf
4.2 years ago by brunobsouzaa ▴ 840
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1
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1.9k
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Comment: Comment: sortsam. picard
updated 4.2 years ago by 103k • written 4.2 years ago by ▴ 840
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1.0k
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Answer: Answer: Base recalibration -Java run time error and no sequence dictionary
4.2 years ago by brunobsouzaa ▴ 840
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1
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3.0k
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Comment: Comment: Inferring CNVs from BAM files with SAMTools depth
4.2 years ago by brunobsouzaa ▴ 840
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1.5k
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Comment: Comment: How do you perform in silico PCR ?
4.2 years ago by brunobsouzaa ▴ 840
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2
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1.5k
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Comment: Comment: Variant annotation using VEP
4.2 years ago by brunobsouzaa ▴ 840
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1
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3.2k
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Comment: Comment: gene expression of specifics gene
4.2 years ago by brunobsouzaa ▴ 840
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1
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3.2k
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Comment: Comment: gene expression of specifics gene
4.3 years ago by brunobsouzaa ▴ 840
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1
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2.0k
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Comment: Comment: print only columns with data from every line
4.3 years ago by brunobsouzaa ▴ 840
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2.8k
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Comment: Comment: error in R
4.3 years ago by brunobsouzaa ▴ 840
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1.6k
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Comment: Comment: WES Agilent SureSelect Human All Exon V7
4.3 years ago by brunobsouzaa ▴ 840
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3.2k
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Comment: Comment: gene expression of specifics gene
4.3 years ago by brunobsouzaa ▴ 840
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1
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2.8k
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Comment: Comment: error in R
4.3 years ago by brunobsouzaa ▴ 840
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1
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2.8k
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Comment: Comment: error in R
4.3 years ago by brunobsouzaa ▴ 840
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1
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3.3k
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Comment: Comment: down regulated and up regulated using r
4.3 years ago by brunobsouzaa ▴ 840
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1.4k
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Comment: Comment: GATK BaseRecalibrator - Null Pointer Exception
4.3 years ago by brunobsouzaa ▴ 840
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1
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1.4k
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Comment: Comment: GATK BaseRecalibrator - Null Pointer Exception
4.3 years ago by brunobsouzaa ▴ 840
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0
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1.4k
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Comment: Comment: Annotate variants for cancer genomics studies
4.3 years ago by brunobsouzaa ▴ 840
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1
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1.4k
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Comment: Comment: Annotate variants for cancer genomics studies
4.3 years ago by brunobsouzaa ▴ 840
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1
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1.9k
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Comment: Comment: SNP ID
4.3 years ago by brunobsouzaa ▴ 840
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1
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1.4k
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Comment: Comment: different padj from DESeq2 when using different contrast input format
4.4 years ago by brunobsouzaa ▴ 840
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0
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1.4k
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Comment: Comment: CNVkit result interpretation
4.4 years ago by brunobsouzaa ▴ 840
0
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0
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3.4k
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Comment: Comment: Help writing code for a question on my homework
4.5 years ago by brunobsouzaa ▴ 840
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1
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1.9k
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Comment: Comment: CNVkit result interpretation
4.5 years ago by brunobsouzaa ▴ 840
1
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0
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1.9k
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Comment: Comment: Annotate vcf with AF, gene symbol, functional information
4.5 years ago by brunobsouzaa ▴ 840
1
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0
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3.8k
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Comment: Comment: CNVkit detected CNV number
4.5 years ago by brunobsouzaa ▴ 840
1
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1
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4.1k
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Comment: Comment: Keep values from VCF file into Ensembl VEP annotation
4.6 years ago by brunobsouzaa ▴ 840
6
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4
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4.1k
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Keep values from VCF file into Ensembl VEP annotation
SNP
updated 3.8 years ago by ▴ 60 • written 4.9 years ago by ▴ 840
1
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0
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894
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Comment: C: Error: mysql table already exists! Is it safe to delete the tables in mysql manu
4.7 years ago by brunobsouzaa ▴ 840
0
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0
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964
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Comment: C: Fisher exact test for 2 by 20000 table and for 4 by 20000 table
4.7 years ago by brunobsouzaa ▴ 840
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1
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964
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Comment: C: Fisher exact test for 2 by 20000 table and for 4 by 20000 table
4.7 years ago by brunobsouzaa ▴ 840
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1
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2.3k
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Comment: C: LncTar error !!!
4.7 years ago by brunobsouzaa ▴ 840
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3.2k
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Comment: C: How to remove duplicate SNP IDs from VCF files?
4.7 years ago by brunobsouzaa ▴ 840
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1.2k
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Comment: C: ensembl-vep annotation fail
4.7 years ago by brunobsouzaa ▴ 840
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1
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1.5k
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Comment: C: About shell script
4.7 years ago by brunobsouzaa ▴ 840
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1
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2.3k
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Comment: C: LDSC - IOError: Not a gzipped file
4.7 years ago by brunobsouzaa ▴ 840
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1
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2.3k
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Comment: C: LDSC - IOError: Not a gzipped file
4.7 years ago by brunobsouzaa ▴ 840
0
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1
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1.2k
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Comment: C: ensembl-vep annotation fail
4.7 years ago by brunobsouzaa ▴ 840
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